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    LOC102547955 uncharacterized LOC102547955 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102547955, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC102547955provided by RGD
    Full Name
    uncharacterized LOC102547955provided by RGD
    Primary source
    RGD:7723636
    See related
    AllianceGenome:RGD:7723636
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 20.8), Adrenal (RPKM 20.0) and 9 other tissues See more
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    Genomic context

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    See LOC102547955 in Genome Data Viewer
    Location:
    10q31
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (82427357..82474702)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (81930912..81953864)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (84881306..84908038)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene proline rich 15-like Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene Sp2 transcription factor Neighboring gene uncharacterized LOC108352124 Neighboring gene Sp6 transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_190590.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    2. NR_190591.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    3. NR_190592.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    4. NR_190593.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    5. NR_190594.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      82427357..82474702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010055771.1 RNA Sequence

    2. XR_010055764.1 RNA Sequence

    3. XR_010055768.1 RNA Sequence

    4. XR_005490745.2 RNA Sequence

    5. XR_005490743.2 RNA Sequence

    6. XR_005490736.2 RNA Sequence

    7. XR_005490748.2 RNA Sequence

    8. XR_010055776.1 RNA Sequence

    9. XR_010055773.1 RNA Sequence

    10. XR_010055774.1 RNA Sequence

    11. XR_010055767.1 RNA Sequence

    12. XR_005490739.2 RNA Sequence

    13. XR_010055770.1 RNA Sequence

    14. XR_010055760.1 RNA Sequence

    15. XR_010055761.1 RNA Sequence

    16. XR_005490728.2 RNA Sequence

    17. XR_010055769.1 RNA Sequence

    18. XR_010055758.1 RNA Sequence

    19. XR_010055757.1 RNA Sequence

    20. XR_010055772.1 RNA Sequence

    21. XR_010055759.1 RNA Sequence

    22. XR_010055756.1 RNA Sequence

    23. XR_010055765.1 RNA Sequence

    24. XR_010055766.1 RNA Sequence

    25. XR_010055763.1 RNA Sequence

    26. XR_010055762.1 RNA Sequence

    27. XR_010055775.1 RNA Sequence

    28. XR_005490732.2 RNA Sequence

    29. XR_005490735.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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