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    Abcg3l2 ATP-binding cassette, subfamily G (WHITE), member 3-like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360910, updated on 10-Jul-2024

    Summary

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    Symbol
    Abcg3l2provided by RGD
    Full Name
    ATP-binding cassette, subfamily G (WHITE), member 3-like 2provided by RGD
    Primary source
    RGD:1359703
    See related
    EnsemblRapid:ENSRNOG00000064381 AllianceGenome:RGD:1359703
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Spleen (RPKM 225.3), Liver (RPKM 213.5) and 9 other tissues See more
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    Genomic context

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    See Abcg3l2 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (4798053..4847424, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (4493259..4538264, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 8 VRAC subunit B Neighboring gene uncharacterized LOC108352839 Neighboring gene uncharacterized LOC134481817 Neighboring gene ATP-binding cassette, subfamily G (WHITE), member 3-like 4 Neighboring gene uncharacterized LOC120096559 Neighboring gene uncharacterized LOC134481816

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-binding cassette, subfamily G (WHITE), member 3-like 2
    Names
    ATP-binding cassette, sub-family G (WHITE), member 3-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419101.1 → NP_001406030.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I5ZW97, A0A8I6A0D0
      Related
      ENSRNOP00000082989.1, ENSRNOT00000106658.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      4798053..4847424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039092155.2 → XP_038948083.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZW97, A0A8I6A0D0
      Conserved Domains (1) summary
      TIGR00955
      Location:54 → 632
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

    2. XM_063273322.1 → XP_063129392.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JTZ9, Q5U314

    3. XM_063273323.1 → XP_063129393.1  ATP-binding cassette, subfamily G (WHITE), member 3-like 2 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JTZ9

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001014133.1: Suppressed sequence

      Description
      NM_001014133.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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