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    pdc1 protein pdc1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 5802967, updated on 22-Jun-2024

    Summary

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    Gene symbol
    pdc1
    Gene description
    protein pdc1
    Locus tag
    SPOM_SPAC20G4.08
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC4F10.01
    Old locus tag
    SPAC20G4.08
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    Genomic context

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    See pdc1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003424.3 (4828900..4832473)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene cofilin Neighboring gene C-24(28) sterol reductase Erg4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene aspartyl metalloaminopeptidase Ape4 Neighboring gene ncRNA Neighboring gene tRNA 2'-O-ribose methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vitro reconstitution of a cellular phase-transition process that involves the mRNA decapping machinery. Fromm SA, et al. Angew Chem Int Ed Engl, 2014 Jul 7. PMID 24862735, Free PMC Article
    2. Pdc1 functions in the assembly of P bodies in Schizosaccharomyces pombe. Wang CY, et al. Mol Cell Biol, 2013 Mar. PMID 23319050, Free PMC Article
    3. Fission Yeast Puf2, a Pumilio and FBF Family RNA-Binding Protein, Links Stress Granules to Processing Bodies. Hsiao WY, et al. Mol Cell Biol, 2020 Apr 13. PMID 32071154, Free PMC Article
    4. Nucleocytoplasmic transport in the midzone membrane domain controls yeast mitotic spindle disassembly. Lucena R, et al. J Cell Biol, 2015 May 11. PMID 25963819, Free PMC Article
    5. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular adaptor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables molecular condensate scaffold activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein pdc1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4828900..4832473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001356184.2 → NP_001342843.1  protein pdc1 [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13892, O36013
      Conserved Domains (2) summary
      pfam16529
      Location:257 → 433
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
      cl25508
      Location:759 → 886
      Spc7; Spc7 kinetochore protein
    Nucleotide Protein
    Heading Accession and Version

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