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    SPOM_SPBC1271.05C zf-AN1 type zinc finger protein, involved in ER membrane translocation [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539988, updated on 22-Jun-2024

    Summary

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    Gene symbol
    SPOM_SPBC1271.05C
    Gene description
    zf-AN1 type zinc finger protein, involved in ER membrane translocation
    Locus tag
    SPOM_SPBC1271.05C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPBC1271.05c
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    Genomic context

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    See SPOM_SPBC1271.05C in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (362850..364861)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene eIF-5A-deoxyhypusine synthase Neighboring gene NLI-interacting factor-like phosphatase family protein Neighboring gene ncRNA Neighboring gene oligosaccharyltransferase subunit Stt3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
    2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane, translocation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    zf-AN1 type zinc finger protein, involved in ER membrane translocation

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      362850..364861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021053.3 → NP_595145.1  zf-AN1 type zinc finger protein, involved in ER membrane translocation [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595145.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94338
      Conserved Domains (2) summary
      smart00154
      Location:151 → 190
      ZnF_AN1; AN1-like Zinc finger
      COG3582
      Location:63 → 214
      COG3582; Predicted nucleic acid binding protein containing the AN1-type Zn-finger [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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