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    hsr1 DNA-binding transcription factor Hsr1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543251, updated on 18-Sep-2024

    Summary

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    Official Symbol
    hsr1
    Official Full Name
    DNA-binding transcription factor Hsr1
    Primary source
    PomBase:SPAC3H1.11
    Locus tag
    SPOM_SPAC3H1.11
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    msn2
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    Genomic context

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    See hsr1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (1957473..1961546)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Lid2 complex PHD finger subunit Snt2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple pathways differentially regulate global oxidative stress responses in fission yeast. Chen D, et al. Mol Biol Cell, 2008 Jan. PMID 18003976, Free PMC Article
    2. Chronological lifespan extension by Ecl1 family proteins depends on Prr1 response regulator in fission yeast. Ohtsuka H, et al. Genes Cells, 2012 Jan. PMID 22212525
    3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
    4. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to starvation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in chromatin ISM
    Inferred from Sequence Model
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcription factor Hsr1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1957473..1961546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018986.3 → NP_593553.1  DNA-binding transcription factor Hsr1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593553.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10076
      Conserved Domains (4) summary
      COG5048
      Location:103 → 582
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:425 → 446
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:423 → 444
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:437 → 462
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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