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    tfb4 transcription factor TFIIH complex subunit Tfb4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540343, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tfb4
    Official Full Name
    transcription factor TFIIH complex subunit Tfb4
    Primary source
    PomBase:SPBC30B4.07c
    Locus tag
    SPOM_SPBC30B4.07C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See tfb4 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (1319070..1320576, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GIDA family tRNA uridine 5-carboxymethylaminomethyl modification enzyme Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene double-strand siRNA ribonuclease Eri1 Neighboring gene ERMES complex subunit Mmm1 Neighboring gene ncRNA Neighboring gene protein Mis19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mediator influences Schizosaccharomyces pombe RNA polymerase II-dependent transcription in vitro. Spahr H, et al. J Biol Chem, 2003 Dec 19. PMID 14534314
    2. RNA polymerase II initiation factor interactions and transcription start site selection. Li Y, et al. Science, 1994 Feb 11. PMID 8303296
    3. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription initiation at RNA polymerase II promoter EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    part_of transcription factor TFIIH core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription factor TFIIH holo complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor TFIIH complex subunit Tfb4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1319070..1320576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021442.3 → NP_595532.1  transcription factor TFIIH complex subunit Tfb4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595532.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13669, O74366
      Conserved Domains (1) summary
      COG5242
      Location:1 → 297
      TFB4; RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
    Nucleotide Protein
    Heading Accession and Version

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