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    SPOM_SPBC1683.04 glycosyl hydrolase family 3 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540167, updated on 10-Jul-2024

    Summary

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    Gene symbol
    SPOM_SPBC1683.04
    Gene description
    glycosyl hydrolase family 3
    Locus tag
    SPOM_SPBC1683.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPBC1683.04
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    Genomic context

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    See SPOM_SPBC1683.04 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (142412..145393)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables beta-glucosidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables scopolin beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular catabolic process NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in glucan catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    glycosyl hydrolase family 3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      142412..145393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020966.3 → NP_595060.1  glycosyl hydrolase family 3 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595060.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P6J6
      Conserved Domains (5) summary
      COG1472
      Location:25 → 380
      BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
      pfam01915
      Location:545 → 666
      Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
      pfam07691
      Location:398 → 544
      PA14; PA14 domain
      pfam14310
      Location:741 → 811
      Fn3-like; Fibronectin type III-like domain
      cl07971
      Location:4 → 280
      Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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