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    STP3 Stp3p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851089, updated on 17-May-2024

    Summary

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    Gene symbol
    STP3
    Gene description
    Stp3p
    Primary source
    FungiDB:YLR375W
    Locus tag
    YLR375W
    See related
    SGD:S000004367; AllianceGenome:SGD:S000004367; VEuPathDB:YLR375W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See STP3 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (871697..872728)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene fatty acid elongase ELO3 Neighboring gene Vid22p Neighboring gene Psy3p Neighboring gene fructose 1,6-bisphosphate 1-phosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The external amino acid signaling pathway promotes activation of Stp1 and Uga35/Dal81 transcription factors for induction of the AGP1 gene in Saccharomyces cerevisiae. Abdel-Sater F, et al. Genetics, 2004 Apr. PMID 15126393, Free PMC Article
    2. Mot1-mediated control of transcription complex assembly and activity. Dasgupta A, et al. EMBO J, 2005 May 4. PMID 15861138, Free PMC Article
    3. Genomic expression program involving the Haa1p-regulon in Saccharomyces cerevisiae response to acetic acid. Mira NP, et al. OMICS, 2010 Oct. PMID 20955010, Free PMC Article
    4. A phenotypic profile of the Candida albicans regulatory network. Homann OR, et al. PLoS Genet, 2009 Dec. PMID 20041210, Free PMC Article
    5. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Badis G, et al. Mol Cell, 2008 Dec 26. PMID 19111667, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding HDA PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Stp3p
    NP_013479.3
    • Zinc-finger hypothetical protein; possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids; STP3 has a paralog, STP4, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      871697..872728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182264.3 → NP_013479.3  TPA: Stp3p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013479.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VZ11, Q05937
      UniProtKB/TrEMBL
      A0A6L1BGM6, A7A1Q1, B5VNR2, C7GRW7, N1NYQ7
      Conserved Domains (2) summary
      COG5048
      Location:137 → 295
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:144 → 161
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05937.1

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