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    aromatic ring-opening dioxygenase [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540104, updated on 18-Sep-2024

    Summary

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    Official Full Name
    aromatic ring-opening dioxygenase
    Primary source
    PomBase:SPBC1709.16c
    Locus tag
    SPOM_SPBC1709.16C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003423.3 (1130500..1132356, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene GTPase-binding protein Rid1 Neighboring gene ribosomal lysine methyltransferase Set10 Neighboring gene ncRNA Neighboring gene peptide N-glycanase Neighboring gene mRNA processing protein Cft2 Neighboring gene ncRNA Neighboring gene putative folylpolyglutamate synthase Neighboring gene ncRNA Neighboring gene translation initiation factor eIF4E, 4F complex E subunit isoform 2, stress response factor Neighboring gene NifU-like protein nfu1 Neighboring gene MIS12/MIND complex Mis12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    aromatic ring-opening dioxygenase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1130500..1132356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021358.3 → NP_595449.2  aromatic ring-opening dioxygenase [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595449.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74741
      Conserved Domains (1) summary
      cl00599
      Location:15 → 297
      Extradiol_Dioxygenase_3B_like; Subunit B of Class III Extradiol ring-cleavage dioxygenases
    Nucleotide Protein
    Heading Accession and Version

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