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    slm5 asparagine--tRNA (Asn) ligase Slm5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539632, updated on 18-Sep-2024

    Summary

    Official Symbol
    slm5
    Official Full Name
    asparagine--tRNA (Asn) ligase Slm5
    Primary source
    PomBase:SPBC1198.10c
    Locus tag
    SPOM_SPBC1198.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

    See slm5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (188789..191676, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene mannan endo-1,6-alpha-mannosidase Neighboring gene ncRNA Neighboring gene dipeptidase Dug1 Neighboring gene ubiquitin conjugating enzyme Ubc16 Neighboring gene ncRNA Neighboring gene RNA polymerase I transcription termination factor/ RNA polymerase II transcription factor Reb1 Neighboring gene transcription factor TFIIF complex beta subunit Tfg2 Neighboring gene ubiquitin ligase Mfr1

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ATP binding ISM
    Inferred from Sequence Model
    more info
     
    enables asparagine-tRNA ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables asparagine-tRNA ligase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables tRNA binding IC
    Inferred by Curator
    more info
     
    Process Evidence Code Pubs
    involved_in asparaginyl-tRNA aminoacylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in asparaginyl-tRNA aminoacylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in mitochondrial translation NAS
    Non-traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    is_active_in mitochondrial matrix IC
    Inferred by Curator
    more info
     
    is_active_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    asparagine--tRNA (Asn) ligase Slm5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      188789..191676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020985.3NP_595079.1  asparagine--tRNA (Asn) ligase Slm5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595079.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P6I0
      Conserved Domains (3) summary
      PRK03932
      Location:9439
      asnC; asparaginyl-tRNA synthetase; Validated
      cd00776
      Location:113434
      AsxRS_core; Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as ...
      cd04318
      Location:23101
      EcAsnRS_like_N; EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB ...