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    hif2 Set3 complex subunit Hif2 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538701, updated on 10-Jul-2024

    Summary

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    Gene symbol
    hif2
    Gene description
    Set3 complex subunit Hif2
    Locus tag
    SPOM_SPCC1235.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPCC1235.09
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    Genomic context

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    See hif2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003421.2 (194364..196528)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene kinetochore protein fta7 Neighboring gene ncRNA Neighboring gene protein pdh1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene exocyst complex subunit Exo3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SET domain protein, Set3p, promotes the reliable execution of cytokinesis in Schizosaccharomyces pombe. Rentas S, et al. PLoS One, 2012. PMID 22347452, Free PMC Article
    2. A conserved histone deacetylase with a role in the regulation of cytokinesis in Schizosaccharomyces pombe. Grewal C, et al. Cell Div, 2012 May 4. PMID 22559741, Free PMC Article
    3. The conserved Fanconi anemia nuclease Fan1 and the SUMO E3 ligase Pli1 act in two novel Pso2-independent pathways of DNA interstrand crosslink repair in yeast. Fontebasso Y, et al. DNA Repair (Amst), 2013 Dec. PMID 24192486, Free PMC Article
    4. Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Shevchenko A, et al. Genome Biol, 2008. PMID 19040720, Free PMC Article
    5. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables transcription corepressor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression, epigenetic IC
    Inferred by Curator
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Rpd3L-Expanded complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Set3 complex EXP
    Inferred from Experiment
    more info
    		 PubMed 
    part_of Set3 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Set3 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Set3 complex subunit Hif2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      194364..196528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022730.3 → NP_587735.1  Set3 complex subunit Hif2 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587735.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74845
      Conserved Domains (4) summary
      COG2319
      Location:263 → 524
      WD40; WD40 repeat [General function prediction only]
      pfam08513
      Location:4 → 30
      LisH; LisH
      sd00039
      Location:267 → 301
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:267 → 523
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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