U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ppr2 PPR repeat-containing protein Ppr2 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540797, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ppr2
    Official Full Name
    PPR repeat-containing protein Ppr2
    Primary source
    PomBase:SPBC18H10.11c
    Locus tag
    SPOM_SPBC18H10.11C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ppr2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (1789291..1790682, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene WW domain-binding protein 4 Neighboring gene ubiquitin hydrolase Ubp4 Neighboring gene zf-CHY type zinc finger protein Neighboring gene splicing-associated factor Saf4 Neighboring gene ncRNA Neighboring gene RNase MRP subunit, ribosomal protein L7-like Rpl701 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 40S ribosomal protein uS11

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression. Kühl I, et al. Nucleic Acids Res, 2011 Oct. PMID 21727087, Free PMC Article
    2. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
    3. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
    4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The deletion of ppr2 interferes iron sensing and leads to oxidative stress response in Schizosaccharomyces pombe.
      Title: The deletion of ppr2 interferes iron sensing and leads to oxidative stress response in Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitochondrial gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in mitochondrial matrix IC
    Inferred by Curator
    more info
    		  
    is_active_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PPR repeat-containing protein Ppr2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1789291..1790682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021633.3 → NP_595735.1  PPR repeat-containing protein Ppr2 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595735.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O60142
      Conserved Domains (2) summary
      sd00004
      Location:84 → 106
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:109 → 156
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials