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    pol5 rRNA processing protein Pol5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539834, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pol5
    Official Full Name
    rRNA processing protein Pol5
    Primary source
    PomBase:SPBC14C8.14c
    Locus tag
    SPOM_SPBC14C8.14C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See pol5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (2225986..2229029, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase subunit Rpb8 Neighboring gene SRR1 family protein, DNA-repair associated protein, Srr1, conflicting annotations across species Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene triglyceride lipase-cholesterol esterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DNA polymerase 5 acetylation by Eso1 is essential for Schizosaccharomyces pombe viability. Chen Z, et al. Int J Mol Med, 2017 Dec. PMID 29039458
    2. Pol5p, a novel binding partner to Cdc10p in fission yeast involved in rRNA production. Nadeem FK, et al. Mol Genet Genomics, 2006 Oct. PMID 16816948
    3. Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit. Braun CM, et al. Nucleic Acids Res, 2020 Jan 10. PMID 31745560, Free PMC Article
    4. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
    5. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA polymerase I transcription regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rDNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rDNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    NOT involved_in nucleolar large rRNA transcription by RNA polymerase I ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rRNA processing protein Pol5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2225986..2229029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021825.3 → NP_595917.1  rRNA processing protein Pol5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595917.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O60094, Q9UTU3
      Conserved Domains (1) summary
      pfam04931
      Location:40 → 800
      DNA_pol_phi; DNA polymerase phi
    Nucleotide Protein
    Heading Accession and Version

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