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    LINC00557 long intergenic non-protein coding RNA 557 [ Homo sapiens (human) ]

    Gene ID: 100861544, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00557provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 557provided by HGNC
    Primary source
    HGNC:HGNC:43701
    See related
    Ensembl:ENSG00000260962 AllianceGenome:HGNC:43701
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC00557 in Genome Data Viewer
    Location:
    13q32.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (94960041..94961319)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (94163546..94164824)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (95612295..95613573)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927284 Neighboring gene ribosomal protein L21 pseudogene 112 Neighboring gene bromodomain containing 7 pseudogene 5 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:95600109-95600726 Neighboring gene VISTA enhancers hs189 and hs341 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:95648475-95649263 Neighboring gene RNA, U6 small nuclear 62, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7867 Neighboring gene ATP binding cassette subfamily C member 4 (PEL blood group) Neighboring gene NANOG hESC enhancer GRCh37_chr13:95826697-95827198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95845687-95846187 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:95856177-95856677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:95861642-95862841 Neighboring gene small nucleolar RNA, C/D box 13G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. Christian SL, et al. Genomics, 2002 May. PMID 11991713

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047487.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139381
      Related
      ENST00000563184.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      94960041..94961319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      94163546..94164824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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