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    LINC00487 long intergenic non-protein coding RNA 487 [ Homo sapiens (human) ]

    Gene ID: 400941, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC00487provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 487provided by HGNC
    Primary source
    HGNC:HGNC:42947
    See related
    Ensembl:ENSG00000205837 AllianceGenome:HGNC:42947
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 1.3), appendix (RPKM 0.4) and 10 other tissues See more
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    Genomic context

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    See LINC00487 in Genome Data Viewer
    Location:
    2p25.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (6729168..6770311, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (6750756..6791900, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (6869300..6910442, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1246 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:6779905-6780508 Neighboring gene MIR7515 host gene Neighboring gene microRNA 7515 Neighboring gene uncharacterized LOC105373404 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6913298-6914497 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:6946605-6947167 Neighboring gene Sharpr-MPRA regulatory region 11536 Neighboring gene negative regulator of interferon response

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ42418, AC079923.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038369.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA768014, AC079923, AK124409, BX118372
      Related
      ENST00000382045.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      6729168..6770311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      6750756..6791900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001695.1: Suppressed sequence

      Description
      NM_001001695.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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