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    ZNF529-AS1 ZNF529 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101927599, updated on 22-Oct-2024

    Summary

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    Official Symbol
    ZNF529-AS1provided by HGNC
    Official Full Name
    ZNF529 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51275
    See related
    Ensembl:ENSG00000233527 AllianceGenome:HGNC:51275
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 1.1), thyroid (RPKM 1.1) and 25 other tissues See more
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    Genomic context

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    See ZNF529-AS1 in Genome Data Viewer
    Location:
    19q13.12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (36573070..36594708)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (39248350..39269993)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (37063972..37085610)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene CTBP2 pseudogene 7 Neighboring gene zinc finger protein 260 Neighboring gene H3K27ac hESC enhancers GRCh37_chr19:37018470-37019180 and GRCh37_chr19:37019181-37019889 Neighboring gene zinc finger protein 529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14529 Neighboring gene zinc finger protein 382 Neighboring gene zinc finger protein 461

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients. Ma Y, et al. BMC Bioinformatics, 2023 Feb 17. PMID 36803542, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients.
      Title: LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC092295.7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110703.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript.
      Source sequence(s)
      AC092295
      Related
      ENST00000687100.1

    2. NR_110704.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AC092295
      Related
      ENST00000592880.7

    3. NR_110705.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate internal exon, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AC092295
      Related
      ENST00000729500.1

    4. NR_110706.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks two exons and contains an alternate 3' terminal exon, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AC092295, CK820070, CK820071

    5. NR_173341.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295

    6. NR_173342.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295

    7. NR_173343.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295
      Related
      ENST00000448373.6

    8. NR_173344.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295

    9. NR_173345.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295
      Related
      ENST00000729512.1

    10. NR_173346.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295

    11. NR_173347.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295
      Related
      ENST00000729491.1

    12. NR_173348.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092295
      Related
      ENST00000729497.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      36573070..36594708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      39248350..39269993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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