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    KCNIP1-AS1 KCNIP1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105377716, updated on 17-Sep-2024

    Summary

    Official Symbol
    KCNIP1-AS1provided by HGNC
    Official Full Name
    KCNIP1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40710
    See related
    Ensembl:ENSG00000253591 AllianceGenome:HGNC:40710
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See KCNIP1-AS1 in Genome Data Viewer
    Location:
    5q35.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (170639158..170681470, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (171177922..171220202, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (170066162..170108474, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817412-169817912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169817913-169818413 Neighboring gene potassium voltage-gated channel interacting protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169818666-169819166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169819167-169819667 Neighboring gene KCNIP1 overlapping transcript 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23611 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16606 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169865238-169866195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169911974-169912474 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:169913290-169913456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:169962091-169962591 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:169979309-169979878 Neighboring gene MPRA-validated peak5573 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:170024020-170025219 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:170038765-170039501 Neighboring gene uncharacterized LOC124901132 Neighboring gene Sharpr-MPRA regulatory region 9502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170052347-170052846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054080-170054580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170054581-170055081 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170059758-170060339 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170063109-170063858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170065509-170066304 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170066305-170067098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:170170758-170171517 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170172277-170173036 Neighboring gene uncharacterized LOC107986473 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170173037-170173795 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170176075-170176832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170178216-170179100 Neighboring gene uncharacterized LOC107986474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170179101-170179985 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170186375-170186905 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170189029-170189559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170193927-170194791 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:170194792-170195655 Neighboring gene uncharacterized LOC107986475 Neighboring gene gamma-aminobutyric acid type A receptor subunit pi

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136214.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC027312
      Related
      ENST00000523591.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      170639158..170681470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      171177922..171220202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)