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    LINC00382 long intergenic non-protein coding RNA 382 [ Homo sapiens (human) ]

    Gene ID: 101927195, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00382provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 382provided by HGNC
    Primary source
    HGNC:HGNC:42709
    See related
    Ensembl:ENSG00000229175 AllianceGenome:HGNC:42709
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00021500
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00382 in Genome Data Viewer
    Location:
    13q31.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (79872586..79918036)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (79100690..79146136)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (80446721..80492171)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903226 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:80381314-80382290 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:80382291-80383266 Neighboring gene long intergenic non-protein coding RNA 1038 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:80456977-80457477 Neighboring gene uncharacterized LOC124903273 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:80510429-80511628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80540344-80541018 Neighboring gene long intergenic non-protein coding RNA 1080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7859 Neighboring gene uncharacterized LOC105370275 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:80707181-80707680 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:80721652-80721755 Neighboring gene Sharpr-MPRA regulatory region 9192

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120413.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC036310
      Related
      ENST00000427918.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      79872586..79918036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      79100690..79146136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)