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    Vcf1 VCP nuclear cofactor family member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 619573, updated on 10-Jul-2024

    Summary

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    Official Symbol
    Vcf1provided by RGD
    Official Full Name
    VCP nuclear cofactor family member 1provided by RGD
    Primary source
    RGD:1563409
    See related
    EnsemblRapid:ENSRNOG00000002851 AllianceGenome:RGD:1563409
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam104a
    Summary
    Orthologous to human FAM104A (family with sequence similarity 104 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 206.5), Heart (RPKM 143.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Vcf1 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (99206549..99227471, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (98707404..98728486, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (102179478..102200488, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39, member 11 Neighboring gene transfer RNA alanine (anticodon UGC) 10 Neighboring gene somatostatin receptor 2 Neighboring gene component of oligomeric golgi complex 1 Neighboring gene mitochondrial nucleoid associated protein 1 Neighboring gene cleavage and polyadenylation specific factor 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    protein VCF1
    Names
    family with sequence similarity 104, member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034958.2 → NP_001030130.2  protein VCF1

      See identical proteins and their annotated locations for NP_001030130.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HKG5, G3V6D5
      Related
      ENSRNOP00000004001.4, ENSRNOT00000004001.8
      Conserved Domains (1) summary
      pfam15434
      Location:79 → 183
      FAM104; Family 104

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      99206549..99227471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006247695.5 → XP_006247757.1  protein VCF1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2KAE7
      Related
      ENSRNOP00000075371.1, ENSRNOT00000081519.3
      Conserved Domains (1) summary
      pfam15434
      Location:79 → 203
      FAM104; Family 104

    2. XM_039086767.2 → XP_038942695.1  protein VCF1 isoform X5

      Conserved Domains (1) summary
      pfam15434
      Location:79 → 108
      FAM104; Family 104

    3. XM_039086768.2 → XP_038942696.1  protein VCF1 isoform X6

      UniProtKB/TrEMBL
      A6HKG6
      Conserved Domains (1) summary
      pfam15434
      Location:73 → 182
      FAM104; Family 104

    4. XM_039086771.2 → XP_038942699.1  protein VCF1 isoform X9

      Conserved Domains (1) summary
      pfam15434
      Location:41 → 149
      FAM104; Family 104

    5. XM_039086764.2 → XP_038942692.1  protein VCF1 isoform X3

      Conserved Domains (1) summary
      pfam15434
      Location:73 → 202
      FAM104; Family 104

    6. XM_006247697.4 → XP_006247759.1  protein VCF1 isoform X7

      Conserved Domains (1) summary
      pfam15434
      Location:45 → 169
      FAM104; Family 104

    7. XM_039086765.2 → XP_038942693.1  protein VCF1 isoform X2

      Conserved Domains (1) summary
      pfam15434
      Location:79 → 108
      FAM104; Family 104

    8. XM_039086770.2 → XP_038942698.1  protein VCF1 isoform X8

      Conserved Domains (1) summary
      pfam15434
      Location:41 → 74
      FAM104; Family 104

    9. XM_039086766.2 → XP_038942694.1  protein VCF1 isoform X4

      Conserved Domains (1) summary
      pfam15434
      Location:73 → 107
      FAM104; Family 104

    10. XM_063269793.1 → XP_063125863.1  protein VCF1 isoform X10

    11. XM_063269794.1 → XP_063125864.1  protein VCF1 isoform X11

    Nucleotide Protein Strain
    Heading Accession and Version

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