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    Ankrd34a ankyrin repeat domain 34A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 295283, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Ankrd34aprovided by RGD
    Official Full Name
    ankyrin repeat domain 34Aprovided by RGD
    Primary source
    RGD:1308412
    See related
    Ensembl:ENSRNOG00000033741 AllianceGenome:RGD:1308412
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ankrd34; RGD1308412
    Summary
    Orthologous to human ANKRD34A (ankyrin repeat domain 34A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 34.4), Heart (RPKM 7.7) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd34a in Genome Data Viewer
    Location:
    2q34
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (186818496..186823921)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (184129830..184135075)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (198720277..198725155)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene thioredoxin interacting protein Neighboring gene RNA polymerase III subunit GL Neighboring gene limb and CNS expressed 1 like Neighboring gene high mobility group protein B1-like Neighboring gene RNA binding motif protein 8A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 34A
    Names
    ankyrin repeat domain 34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024980.1 → NP_001020151.1  ankyrin repeat domain-containing protein 34A

      See identical proteins and their annotated locations for NP_001020151.1

      Status: PROVISIONAL

      Source sequence(s)
      BC091343
      UniProtKB/Swiss-Prot
      Q5BJT1
      Related
      ENSRNOP00000053081.2, ENSRNOT00000043535.4
      Conserved Domains (2) summary
      COG0666
      Location:9 → 133
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:8 → 35
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      186818496..186823921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102051.2 → XP_038957979.1  ankyrin repeat domain-containing protein 34A isoform X1

      UniProtKB/Swiss-Prot
      Q5BJT1
      Conserved Domains (2) summary
      COG0666
      Location:9 → 133
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:8 → 35
      ANK; ANK repeat [structural motif]

    2. XM_063281626.1 → XP_063137696.1  ankyrin repeat domain-containing protein 34A isoform X1

      UniProtKB/Swiss-Prot
      Q5BJT1

    3. XM_008761283.4 → XP_008759505.1  ankyrin repeat domain-containing protein 34A isoform X1

      See identical proteins and their annotated locations for XP_008759505.1

      UniProtKB/Swiss-Prot
      Q5BJT1
      Conserved Domains (2) summary
      COG0666
      Location:9 → 133
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:8 → 35
      ANK; ANK repeat [structural motif]

    4. XM_039102052.2 → XP_038957980.1  ankyrin repeat domain-containing protein 34A isoform X1

      UniProtKB/Swiss-Prot
      Q5BJT1
      Related
      ENSRNOP00000095983.1
      Conserved Domains (2) summary
      COG0666
      Location:9 → 133
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:8 → 35
      ANK; ANK repeat [structural motif]

    5. XM_039102050.2 → XP_038957978.1  ankyrin repeat domain-containing protein 34A isoform X1

      UniProtKB/Swiss-Prot
      Q5BJT1
      Conserved Domains (2) summary
      COG0666
      Location:9 → 133
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:8 → 35
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BJT1.1 GenPept UniProtKB/Swiss-Prot:Q5BJT1

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