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    CTNNA1P1 catenin alpha 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 1498, updated on 17-Sep-2024

    Summary

    Official Symbol
    CTNNA1P1provided by HGNC
    Official Full Name
    catenin alpha 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:2513
    See related
    AllianceGenome:HGNC:2513
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTNNAP1
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    Genomic context

    See CTNNA1P1 in Genome Data Viewer
    Location:
    5q22.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (115389024..115392441, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (115902362..115905779, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (114724721..114728138, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379129 Neighboring gene NANOG hESC enhancer GRCh37_chr5:114693885-114694386 Neighboring gene NANOG hESC enhancer GRCh37_chr5:114695934-114696435 Neighboring gene uncharacterized LOC105379130 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:114704953-114705456 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:114705457-114705960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22928 Neighboring gene Sharpr-MPRA regulatory region 9424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22929 Neighboring gene AK3 pseudogene 4 Neighboring gene MPRA-validated peak5426 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:114795999-114797198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22930 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22931 Neighboring gene COX assembly mitochondrial protein homolog

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Other Names

    • catenin (cadherin-associated protein), alpha 1 pseudogene 1
    • catenin (cadherin-associated protein), alpha pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_001110.5 

      Range
      101..3518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      115389024..115392441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      115902362..115905779 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)