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    LINC01951 long intergenic non-protein coding RNA 1951 [ Homo sapiens (human) ]

    Gene ID: 441116, updated on 17-Jun-2024

    Summary

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    Official Symbol
    LINC01951provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1951provided by HGNC
    Primary source
    HGNC:HGNC:52774
    See related
    Ensembl:ENSG00000204754 AllianceGenome:HGNC:52774
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01951 in Genome Data Viewer
    Location:
    5q35.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174919082..174995731, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175462341..175539018, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (174346085..174422734, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene microRNA 4634 Neighboring gene uncharacterized LOC105377742 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:174270439-174271000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:174328123-174328624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:174328625-174329124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174344229-174344968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174344969-174345708 Neighboring gene Sharpr-MPRA regulatory region 11389 Neighboring gene NIFK pseudogene 2 Neighboring gene uncharacterized LOC107986484 Neighboring gene Sharpr-MPRA regulatory region 3886 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:174550039-174551238 Neighboring gene Sharpr-MPRA regulatory region 8865 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:174697681-174698880 Neighboring gene ADP ribosylation factor like GTPase 2 binding protein pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CTC-281M20.1

    Clone Names

    • FLJ16171

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046113.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008413, AK131247
      Related
      ENST00000377300.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      174919082..174995731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      175462341..175539018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001004348.1: Suppressed sequence

      Description
      NM_001004348.1: This RefSeq was permanently suppressed because currently there is insufficient data to support the transcript and protein.
    Nucleotide Protein
    Heading Accession and Version

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