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    PF3D7_1030000 transcription elongation factor SPT4, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810450, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1030000
    Gene description
    transcription elongation factor SPT4, putative
    Locus tag
    PF3D7_1030000
    See related
    PlasmoDB:PF3D7_1030000; VEuPathDB:PF3D7_1030000
    Gene type
    protein coding
    RNA name
    transcription elongation factor SPT4, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1030000 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Sequence:
    Chromosome: 10; NC_037281.1 (1223375..1224167)

    Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene heptatricopeptide repeat and RAP domain-containing protein, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative Neighboring gene claudin-like apicomplexan microneme protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037281.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The chromatin bound proteome of the human malaria parasite. Batugedara G, et al. Microb Genom, 2020 Feb. PMID 32017676, Free PMC Article
    2. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rDNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT4, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037281.1 Reference assembly

      Range
      1223375..1224167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347541.1 → XP_001347577.1  transcription elongation factor SPT4, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347577.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V5K9, A0A024W6D3, A0A024X6E4, A0A0L0CT93, A0A0L1ICQ0, A0A0L7K8Y1, A0A0L7M696, A0A2I0BQI8, Q8IJA5, W4IHE6, W4J459, W7F053, W7G4Y4
      Conserved Domains (1) summary
      pfam06093
      Location:43 → 118
      Spt4; Spt4/RpoE2 zinc finger
    Nucleotide Protein
    Heading Accession and Version

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