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    PF3D7_1236100 clustered-asparagine-rich protein [ Plasmodium falciparum 3D7 ]

    Gene ID: 811401, updated on 17-May-2024

    Summary

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    Gene symbol
    PF3D7_1236100
    Gene description
    clustered-asparagine-rich protein
    Primary source
    PlasmoDB:PF3D7_1236100
    Locus tag
    PF3D7_1236100
    See related
    VEuPathDB:PF3D7_1236100
    Gene type
    protein coding
    RNA name
    clustered-asparagine-rich protein
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
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    Genomic context

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    See PF3D7_1236100 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Sequence:
    Chromosome: 12; NC_037284.1 (1506932..1508269, complement)

    Chromosome 12 - NC_037284.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SYF1, putative Neighboring gene vesicle transport v-SNARE protein VTI1, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene conserved protein, unknown function

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037284.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum. Bunnik EM, et al. Genome Biol, 2016 Jul 5. PMID 27381095, Free PMC Article
    2. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    3. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    4. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    5. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    clustered-asparagine-rich protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037284.1 Reference assembly

      Range
      1506932..1508269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001350719.2 → XP_001350755.2  clustered-asparagine-rich protein [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001350755.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024WMW9, A0A024X502, Q8I562, W4J1H3, W7F906, W7FVM8, W7JR95
      Conserved Domains (3) summary
      pfam00397
      Location:312 → 337
      WW; WW domain
      cd00590
      Location:18 → 85
      RRM_SF; RNA recognition motif (RRM) superfamily
      cd12362
      Location:362 → 433
      RRM3_CELF1-6; RNA recognition motif 3 (RRM3) found in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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