U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PF3D7_1406700 vacuolar protein sorting-associated protein 29 [ Plasmodium falciparum 3D7 ]

    Gene ID: 811646, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    PF3D7_1406700
    Gene description
    vacuolar protein sorting-associated protein 29
    Primary source
    PlasmoDB:PF3D7_1406700
    Locus tag
    PF3D7_1406700
    See related
    VEuPathDB:PF3D7_1406700
    Gene type
    protein coding
    RNA name
    vacuolar protein sorting-associated protein 29
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PF3D7_1406700 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Sequence:
    Chromosome: 14; NC_037283.1 (244908..245492)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 65, putative Neighboring gene ATP-dependent Clp protease regulatory subunit ClpC Neighboring gene glideosome associated protein with multiple membrane spans 3 Neighboring gene radical SAM protein, putative

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Expression, purification and characterization of Plasmodium falciparum vacuolar protein sorting 29. Iqbal MS, et al. Protein Expr Purif, 2016 Apr. PMID 26690372
    2. Detection of retromer assembly in Plasmodium falciparum by immunosensing coupled to Surface Plasmon Resonance. Iqbal MS, et al. Biochim Biophys Acta Proteins Proteom, 2018 May-Jun. PMID 29654975
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Biophysical characterization and subcellular localization of VPS29 in different asexual stages of Plasmodium falciparum.
      Title: Expression, purification and characterization of Plasmodium falciparum vacuolar protein sorting 29.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within retrograde transport, endosome to Golgi ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of retromer complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vacuolar protein sorting-associated protein 29

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      244908..245492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348201.1 → XP_001348237.1  vacuolar protein sorting-associated protein 29 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348237.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V085, A0A024VLF9, A0A024W2F9, A0A024WIE8, A0A024X1T7, A0A0L1I8Y1, A0A0L7K771, A0A0L7M8K5, Q8IM27, W4IBK0, W4J133, W7F5U8, W7FNW1, W7JHF4, W7JML7
      Conserved Domains (1) summary
      cd07394
      Location:11 → 188
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials