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    LOC4345606 betaine aldehyde dehydrogenase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345606, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345606
    Gene description
    betaine aldehyde dehydrogenase 2-like
    Locus tag
    OSNPB_080424500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    fgr; BADH2; OsBADH2; OsJ_27367
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    Genomic context

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    See LOC4345606 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (20516934..20523200)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (20379779..20386042)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene alpha carbonic anhydrase 7 Neighboring gene methylcrotonoyl-CoA carboxylase beta chain, mitochondrial Neighboring gene uncharacterized LOC136351444 Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized LOC4345609

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. analysis of BADH1 and BADH2 in rice (Oryza sativa) reveals that BADH2 was domesticated during rice evolution, while BADH1 was not selected by human beings
      Title: Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).
    2. Point mutation of BADH accounted for the accumulation of gamma-aminobutyraldehyde prior to conversion to 2-acetyl-1-pyrroline, generating fragrance in Myanmar rice.
      Title: Biochemical and enzymatic study of rice BADH wild-type and mutants: an insight into fragrance in rice.
    3. The Os08g0424500 gene product has major activity towards gamma-aminoaldehyde and minor activity towards betaine aldehyde and other aminoaldehydes. [BAD2]
      Title: Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice.
    4. This paper is the first that identified a non-functional Os08g0424500 as being responsible for the generation of 2-Acetyl-1-pyrroline in Jasmine and Basmati style rice.
      Title: The gene for fragrance in rice.
    5. inhibits 2-acetyl-1-pyrroline biosynthesis by exhausting AB-ald, a presumed 2AP precursor
      Title: Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    betaine aldehyde dehydrogenase 2
    Names
    OSJNBa0056L09.30
    Os08g0424500
    P0456B03.101
    putative betaine-aldehyde dehydrogenase
    NP_001390502.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403573.1 → NP_001390502.1  betaine aldehyde dehydrogenase 2

      Status: VALIDATED

      Source sequence(s)
      CB649658, CB649659, CB655655, CB655656, CF329625, CI766545
      UniProtKB/Swiss-Prot
      A0A0N7KPV7, B3VMC0, Q06DE4, Q84LK3
      UniProtKB/TrEMBL
      A0A8K1HC45

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      20516934..20523200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84LK3.1 GenPept UniProtKB/Swiss-Prot:Q84LK3

    Gene LinkOut

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