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    SNR190 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164910, updated on 11-Apr-2024

    Summary

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    Gene symbol
    SNR190
    Primary source
    SGD:S000006509
    Locus tag
    YNCJ0004C
    See related
    AllianceGenome:SGD:S000006509
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable rRNA 2'-O-ribose methylation guide activity. Predicted to be involved in RNA processing. Located in nucleolus. Part of box C/D RNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See SNR190 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (139761..139950, complement)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene SCF ubiquitin ligase complex subunit DAS1 Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase I subunit RPA34 Neighboring gene Smt1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs. Zagorski J, et al. Mol Cell Biol, 1988 Aug. PMID 2850487, Free PMC Article
    2. The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast. Tollervey D, et al. EMBO J, 1991 Mar. PMID 1825809, Free PMC Article
    3. Processing of the precursors to small nucleolar RNAs and rRNAs requires common components. Petfalski E, et al. Mol Cell Biol, 1998 Mar. PMID 9488433, Free PMC Article
    4. Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI. Katsoulou C, et al. Yeast, 1996 Jun 30. PMID 8813765
    5. The DEAD-box protein Dbp6 is an ATPase and RNA annealase interacting with the peptidyl transferase center (PTC) of the ribosome. Khreiss A, et al. Nucleic Acids Res, 2023 Jan 25. PMID 36610750, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast.
      Title: Association of snR190 snoRNA chaperone with early pre-60S particles is regulated by the RNA helicase Dbp7 in yeast.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • C/D box small nucleolar RNA (snoRNA); predicted to guide 2'-O-methylation of large subunit (LSU) rRNA at position G2395; not shown to be active

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA folding chaperone IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of box C/D methylation guide snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    is_active_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      139761..139950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132194.1 RNA Sequence

      Status: REVIEWED

    Gene LinkOut

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