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    ENTPD1-AS1 ENTPD1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 728558, updated on 10-Oct-2023

    Summary

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    Official Symbol
    ENTPD1-AS1provided by HGNC
    Official Full Name
    ENTPD1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:45203
    See related
    Ensembl:ENSG00000226688 AllianceGenome:HGNC:45203
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in small intestine (RPKM 2.3), fat (RPKM 2.0) and 23 other tissues See more
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    Genomic context

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    Location:
    10q24.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (95753206..96090235, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (96632306..96969547, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (97512963..97849992, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 3716 Neighboring gene aldehyde dehydrogenase 18 family member A1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3801 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:97454143-97454644 Neighboring gene tectonic family member 3 Neighboring gene MPRA-validated peak1056 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3803 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3804 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3805 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2651 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3807 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3808 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3811 Neighboring gene Sharpr-MPRA regulatory region 13404 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:97645298-97645457 Neighboring gene MPRA-validated peak1059 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3814 Neighboring gene coiled-coil and C2 domain containing 2B Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:97786197-97787396 Neighboring gene ribosomal protein L21 pseudogene 90 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2652 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:97802729-97802923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3815 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3816 Neighboring gene microRNA 3157 Neighboring gene cyclin J Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:97883716-97884300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:97884301-97884886 Neighboring gene uncharacterized LOC124902486 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr10:97889010-97889914 and GRCh37_chr10:97889915-97890818 Neighboring gene RNA, U6 small nuclear 271, pseudogene Neighboring gene zinc finger protein 518A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • weakly similar to zinc finger protein 195

    Clone Names

    • FLJ34077, FLJ39150, MGC10764

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038444.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AK091396, AL365273, BU852745
      Related
      ENST00000416301.5

    2. NR_134320.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks four 3' exons but contains alternate 3' exon structure, compared to variant 1.
      Source sequence(s)
      AI571323, BC028619, BU852745, DA419635

    3. NR_134321.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks four 3' exons but contains alternate 3' exon structure, compared to variant 1.
      Source sequence(s)
      AI571323, BC028619, BU852745, DA419635
      Related
      ENST00000691417.2

    4. NR_134322.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks four 3' exons but contains alternate 3' exon structure, compared to variant 1.
      Source sequence(s)
      AI571323, AL120918, BC028619, BU852745, DA419635
      Related
      ENST00000701996.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      95753206..96090235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      96632306..96969547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials