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    LINC02308 long intergenic non-protein coding RNA 2308 [ Homo sapiens (human) ]

    Gene ID: 100506700, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02308provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2308provided by HGNC
    Primary source
    HGNC:HGNC:53227
    See related
    AllianceGenome:HGNC:53227
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02308 in Genome Data Viewer
    Location:
    14q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (81441987..81450157, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (75656797..75664967, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (81908331..81916501, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene stonin 2 Neighboring gene ribosomal protein S24 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:81852327-81852827 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:81893820-81894324 Neighboring gene dynein light chain LC8-type 1 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:81915824-81916798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8829 Neighboring gene MPRA-validated peak2221 silencer Neighboring gene SEL1L adaptor subunit of SYVN1 ubiquitin ligase Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:81999985-82000484 Neighboring gene NANOG hESC enhancer GRCh37_chr14:82004271-82004943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8830 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:82027640-82028183 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:82079661-82080436 Neighboring gene long intergenic non-protein coding RNA 1467

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109999.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA629110, AI078294, CR743158

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      81441987..81450157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      75656797..75664967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)