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    sigO alternative sigma factor [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 935983, updated on 6-Oct-2023

    Summary

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    Gene symbol
    sigO
    Gene description
    alternative sigma factor
    Locus tag
    BSU_33230
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU33230
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    Genomic context

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    Sequence:
    NC_000964.3 (3409462..3409992, complement)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene two-component sensor histidine kinase YvrG [cell wall processes and sublancin production and immunity (YvrH)] Neighboring gene two-component sensor histidine kinase YvrG [cell wall processes and sublancin production and immunity (YvrG)] Neighboring gene regulator of sigma-O Neighboring gene factor involved in oxalate decarboxylase expression Neighboring gene oxalate decarboxylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a protein-protein interaction within the SigO-RsoA two-subunit σ factor: the σ70 region 2.3-like segment of RsoA mediates interaction with SigO. Xue X, et al. Microbiology (Reading), 2016 Oct. PMID 27558998, Free PMC Article
    2. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    3. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    4. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
    5. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The sigma70 region 2.3-like segment of RsoA is sufficient for interaction with the amino-terminus of SigO and the beta' subunit.
      Title: Characterization of a protein-protein interaction within the SigO-RsoA two-subunit σ factor: the σ70 region 2.3-like segment of RsoA mediates interaction with SigO.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    alternative sigma factor
    NP_391203.2
    • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 16306698, 18573182, 19047353, 27558998; Product type r: regulator

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      3409462..3409992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_391203.2 alternative sigma factor [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_391203.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D1KHD6
      Conserved Domains (1) summary
      TIGR02937
      Location:33 → 168
      sigma70-ECF; RNA polymerase sigma factor, sigma-70 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O34843.2

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases