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    LOC4330264 GDSL esterase/lipase At5g55050 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330264, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330264
    Gene description
    GDSL esterase/lipase At5g55050
    Locus tag
    OSNPB_020669000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0684A08.8; OJ1725_H08.22
    Expression
    Broad expression in flowers (RPKM 9.1), roots before flowering (RPKM 8.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27158472..27162807, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene ganglioside-induced differentiation-associated protein 2 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene dehydrin DHN1-like Neighboring gene uncharacterized LOC4330266

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At5g55050
    Names
    Os02g0669000
    putative anter-specific proline-rich protein APG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27158472..27162807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768064.2 → XP_015623550.1  GDSL esterase/lipase At5g55050

      UniProtKB/TrEMBL
      B8AGE0, Q0DYT6, Q6ESR5
      Conserved Domains (1) summary
      cd01837
      Location:27 → 345
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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