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TPF view for mouse chromosome 11

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TPF revision information

Last updated:
May 4, 2020 at 8:38 AM Eastern Time
By:
NCBI(rezaiet)
Version:
26

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Serious alignment problem, requires review
  • Minor alignment problem
  • Excellent alignment, meets all defined criteria
  • Certificate submitted, not yet approved
  • Certificate submitted and approved
  • Valid, contained clone
  • Join not evaluated due to one accession not being finished
Current TPF view for mouse chromosome 11 (v. 26)
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
GAP TELOMERE 100000
GAP SHORT-ARM 10000
GAP CENTROMERE 2890000
GAP type-3
CR954170.4 CH25-134G2 MMCHR11_CTG3 SC fin 2,000 0 100
BX572640.9 RP24-239M11 MMCHR11_CTG3 SC fin 2,000 0 100
AL671968.17 RP23-191E3 MMCHR11_CTG3 SC fin 2,000 0 100
AL713875.14 RP23-17N7 MMCHR11_CTG3 SC fin 515 0 100 alignment length < 2000
AL691413.5 RP23-309E11 MMCHR11_CTG3 SC fin 2,000 0 100
AL731853.9 RP23-128G5 MMCHR11_CTG3 SC fin 2,000 0 100
AL807241.5 RP23-453E10 MMCHR11_CTG3 SC fin 2,000 0 100
AL807395.8 RP23-81P12 MMCHR11_CTG3 SC fin 2,000 0 100
AL807825.5 RP23-453B22 MMCHR11_CTG3 SC fin 2,000 0 100
AL731658.20 RP23-329P17 MMCHR11_CTG3 SC fin 2,000 0 100
AL645910.8 RP23-173M6 MMCHR11_CTG3 SC fin 2,000 0 100
BX323081.3 RP24-294L19 MMCHR11_CTG3 SC fin 2,000 0 100
AL606521.24 RP23-280J3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645603.12 RP23-299L18 MMCHR11_CTG3 SC fin 2,000 0 100
AL645522.12 RP23-64E17 MMCHR11_CTG3 SC fin 2,000 0 100
AL645845.14 RP23-338J18 MMCHR11_CTG3 SC fin 2,000 0 100
AL662853.16 RP23-293J16 MMCHR11_CTG3 SC fin 2,000 0 100
AL662876.23 RP23-288K19 MMCHR11_CTG3 SC fin 2,000 0 100
AL669935.7 RP23-387E5 MMCHR11_CTG3 SC fin 1,999 1 100 alignment length < 2000
AL627069.10 RP23-385C16 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL645469.18 RP23-340E18 MMCHR11_CTG3 SC fin 2,000 0 100
AL611926.12 RP23-28G13 MMCHR11_CTG3 SC fin 2,000 0 100
AL607152.21 RP23-198N14 MMCHR11_CTG3 SC fin 2,000 0 100
AL646020.15 RP23-74L9 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL646047.9 RP23-69P8 MMCHR11_CTG3 SC fin 2,000 0 100
AL603787.8 RP23-169J19 MMCHR11_CTG3 SC fin 2,000 0 100
AL669825.10 RP23-327K3 MMCHR11_CTG3 SC fin 1,996 1 100 alignment length < 2000
AL669838.22 RP23-324A4 MMCHR11_CTG3 SC fin 2,000 0 100
AL607124.15 RP23-20C9 MMCHR11_CTG3 SC fin 1,998 1 100 alignment length < 2000
AL645630.9 RP23-8C1 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02051353.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645630.9 wgs 86,529 2 99.991 contained sequence
AL731723.17 RP23-72G8 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02051351.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL731723.17 wgs 8,611 1 99.988 contained sequence
AL646044.13 RP23-269O5 MMCHR11_CTG3 SC fin 2,000 0 100
AL607107.9 RP23-230C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL606470.15 RP23-293J11 MMCHR11_CTG3 SC fin 2,000 0 100
AL670364.5 RP23-239H8 MMCHR11_CTG3 SC fin 2,000 0 100
AL603845.11 RP23-145C12 MMCHR11_CTG3 SC fin 2,000 0 100
AL662881.10 RP23-321C9 MMCHR11_CTG3 SC fin 2,000 0 100
AL731802.12 RP23-282N10 MMCHR11_CTG3 SC fin 2,000 0 100
AL645636.22 RP23-337B10 MMCHR11_CTG3 SC fin 2,000 0 100
AL645571.18 RP23-39H1 MMCHR11_CTG3 SC fin 2,000 0 100
AL669837.3 RP23-219P13 MMCHR11_CTG3 SC fin 2,000 0 100
AL645994.7 RP23-104F14 MMCHR11_CTG3 SC fin 2,000 0 100
AL663110.6 RP23-224P22 MMCHR11_CTG3 SC fin 2,000 0 100
AL669853.5 RP23-204F22 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL663114.4 RP23-269C21 MMCHR11_CTG3 SC fin 2,000 0 100
AL928907.3 RP23-255L15 MMCHR11_CTG3 SC fin 2,000 0 100
AL691451.11 RP23-249C15 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02083912.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL691451.11 wgs 17,772 1 99.989 contained sequence
AL663103.4 RP23-267D13 MMCHR11_CTG3 SC fin 2,000 0 100
AL731694.12 RP23-138G17 MMCHR11_CTG3 SC fin 2,000 0 100
AL663108.4 RP23-19H23 MMCHR11_CTG3 SC fin 2,000 0 100
AL663097.14 RP23-75I15 MMCHR11_CTG3 SC fin 2,000 0 100
BX000695.5 RP23-458E19 MMCHR11_CTG3 SC fin 2,000 0 100
AL646098.9 RP23-107I24 MMCHR11_CTG3 SC fin 2,000 0 100
AL662802.14 RP23-34N10 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02083987.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662802.14 wgs 22,346 3 99.996 contained sequence
AL670244.10 RP23-291I11 MMCHR11_CTG3 SC fin 2,000 0 100
AL663084.11 RP23-305B2 MMCHR11_CTG3 SC fin 2,000 0 100
AL663071.5 RP23-446K7 MMCHR11_CTG3 SC fin 2,000 0 100
AL662805.13 RP23-311O20 MMCHR11_CTG3 SC fin 2,000 0 100
AL731817.11 RP23-3J16 MMCHR11_CTG3 SC fin 2,000 0 100
AL596450.8 RP23-373H2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645803.19 RP23-119N24 MMCHR11_CTG3 SC fin 2,000 0 100
AL663087.14 RP23-431M5 MMCHR11_CTG3 SC fin 2,000 0 100
AL954732.16 RP24-181O3 MMCHR11_CTG3 SC fin 2,000 0 100
AL669833.7 RP23-51C16 MMCHR11_CTG3 SC fin 2,000 0 100
AL713914.10 RP24-293E17 MMCHR11_CTG3 SC fin 2,000 0 100
AL669822.10 RP23-47J12 MMCHR11_CTG3 SC fin 2,000 0 100
AL645934.7 RP23-27P11 MMCHR11_CTG3 SC fin 2,000 0 100
AL672262.11 RP23-318G8 MMCHR11_CTG3 SC fin 2,000 0 100
AL663080.15 RP23-50H4 MMCHR11_CTG3 SC fin 2,000 0 100
AL669912.7 RP23-147K24 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084151.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL669912.7 wgs 30,724 4 99.990 contained sequence
AL645682.14 RP23-287B22 MMCHR11_CTG3 SC fin 1,999 1 100 alignment length < 2000
AL669852.6 RP23-339F11 MMCHR11_CTG3 SC fin 2,000 0 100
AL691518.9 RP23-267K1 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084185.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL691518.9 wgs 17,378 1 99.988 contained sequence
AL928984.5 RP24-474O17 MMCHR11_CTG3 SC fin 2,000 0 100
AL662900.12 RP23-413L24 MMCHR11_CTG3 SC fin 2,000 0 100
AL713925.10 RP23-298B18 MMCHR11_CTG3 SC fin 2,000 0 100
AL606508.12 RP23-180B9 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL663044.5 RP23-440I12 MMCHR11_CTG3 SC fin 2,000 0 100
AL607146.6 RP23-312G6 MMCHR11_CTG3 SC fin 2,000 0 100
AL627346.14 RP23-313I9 MMCHR11_CTG3 SC fin 2,000 0 100
AL603917.5 RP23-107J13 MMCHR11_CTG3 SC fin 2,000 0 100
AL732589.4 RP23-405I23 MMCHR11_CTG3 SC fin 2,000 0 100
AL603793.4 RP23-131A14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645843.14 RP23-338K15 MMCHR11_CTG3 SC fin 2,000 0 100
AL607126.9 RP23-206I16 MMCHR11_CTG3 SC fin 2,000 0 100
AL663040.6 RP23-61M22 MMCHR11_CTG3 SC fin 2,000 0 100
AL645844.18 RP23-82B4 MMCHR11_CTG3 SC fin 2,000 0 100
AL604027.9 RP23-155G20 MMCHR11_CTG3 SC fin 2,000 0 100
AL607125.14 RP23-309F11 MMCHR11_CTG3 SC fin 2,000 0 100
AL606512.8 RP23-155D19 MMCHR11_CTG3 SC fin 1,990 1 100 alignment length < 2000
AL604031.10 RP23-24O5 MMCHR11_CTG3 SC fin 2,000 0 100
AL663034.12 RP23-266P16 MMCHR11_CTG3 SC fin 2,000 0 100
AL603924.18 RP23-188C13 MMCHR11_CTG3 SC fin 2,000 0 100
BX470090.3 RP23-261B11 MMCHR11_CTG3 SC fin 2,000 0 100
BX255277.5 RP23-478B14 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084449.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in BX255277.5 wgs 1,036 0 99.903 alignment length < 2000
AL645532.16 RP23-295E4 MMCHR11_CTG3 SC fin 2,000 0 100
AL606466.12 RP23-348N2 MMCHR11_CTG3 SC fin 2,000 0 100
AL713926.9 RP23-32H19 MMCHR11_CTG3 SC fin 2,000 0 100
AL603925.20 RP23-175K24 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084489.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL603925.20 wgs 26,283 4 99.996 contained sequence
AL645591.17 RP23-298I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL646050.7 RP23-460G5 MMCHR11_CTG3 SC fin 2,000 0 100
AL731862.6 RP23-388A6 MMCHR11_CTG3 SC fin 2,000 0 100
AL627070.16 RP23-353E13 MMCHR11_CTG3 SC fin 2,000 0 100
AL732529.6 RP23-254N15 MMCHR11_CTG3 SC fin 2,000 0 100
AL604062.15 RP23-104B6 MMCHR11_CTG3 SC fin 2,000 0 100
AL671973.13 RP23-334J9 MMCHR11_CTG3 SC fin 2,000 0 100
AL732489.7 RP23-463I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL645747.11 RP23-436D9 MMCHR11_CTG3 SC fin 2,000 0 100
AL626770.9 RP23-379J18 MMCHR11_CTG3 SC fin 2,000 0 100
AL732592.10 RP23-18O23 MMCHR11_CTG3 SC fin 2,000 0 100
AL645570.13 RP23-377H12 MMCHR11_CTG3 SC fin 2,000 0 100
AL603984.7 RP23-137B16 MMCHR11_CTG3 SC fin 2,000 0 100
AL606520.16 RP23-280G18 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084624.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL606520.16 wgs 34,338 3 99.997 contained sequence
AL604026.9 RP23-275K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL603907.12 RP23-139D10 MMCHR11_CTG3 SC fin 2,000 0 100
AL646043.7 RP23-5M21 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084654.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL646043.7 wgs 22,897 1 99.996 contained sequence
AL645609.21 RP23-432O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL672084.10 RP23-223D13 MMCHR11_CTG3 SC fin 2,000 0 100
AL606522.6 RP23-19L22 MMCHR11_CTG3 SC fin 2,000 0 100
AL662926.19 RP23-403O15 MMCHR11_CTG3 SC fin 2,000 0 100
AL732561.6 RP23-275L6 MMCHR11_CTG3 SC fin 2,000 0 100
AL645598.14 RP23-259J23 MMCHR11_CTG3 SC fin 2,000 0 100
AL663115.11 RP23-452C23 MMCHR11_CTG3 SC fin 2,000 0 100
AL645599.14 RP23-285F4 MMCHR11_CTG3 SC fin 2,000 0 100
AL662817.11 RP23-455B19 MMCHR11_CTG3 SC fin 2,000 0 100
AL713924.12 RP23-443J11 MMCHR11_CTG3 SC fin 2,000 0 100
AL669888.8 RP23-31B23 MMCHR11_CTG3 SC fin 2,000 0 100
AL669979.13 RP23-93O11 MMCHR11_CTG3 SC fin 2,000 0 100
AL833772.8 RP23-154K13 MMCHR11_CTG3 SC fin 2,000 0 100
AL772195.4 RP23-218C5 MMCHR11_CTG3 SC fin 2,000 0 100
AL663049.8 RP23-198N8 MMCHR11_CTG3 SC fin 2,000 0 100
AL714015.11 RP23-68I15 MMCHR11_CTG3 SC fin 2,000 0 100
AL662811.20 RP23-202E24 MMCHR11_CTG3 SC fin 2,000 0 100
AL669858.8 RP23-51G7 MMCHR11_CTG3 SC fin 2,000 0 100
AL731860.8 RP23-367H4 MMCHR11_CTG3 SC fin 2,000 0 100
AL732397.5 RP23-469O11 MMCHR11_CTG3 SC fin 2,000 0 100
AL731818.6 RP23-401L13 MMCHR11_CTG3 SC fin 2,000 0 100
AL806526.4 RP23-123F24 MMCHR11_CTG3 SC fin 2,000 0 100
AL732607.9 RP23-16B24 MMCHR11_CTG3 SC fin 2,000 0 100
AL772364.21 RP23-242C19 MMCHR11_CTG3 SC fin 2,000 0 100
BX001008.3 RP24-143D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL691470.17 RP23-160F12 MMCHR11_CTG3 SC fin 2,000 0 100
AL772359.8 RP23-305E10 MMCHR11_CTG3 SC fin 2,000 0 100
AL928722.4 RP23-123E19 MMCHR11_CTG3 SC fin 2,000 0 100
AL672004.12 RP23-200C21 MMCHR11_CTG3 SC fin 2,000 0 100
AL672049.13 RP23-188K3 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02084954.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL672049.13 wgs 7,056 1 99.986 contained sequence
BX255874.1 RP24-181E15 MMCHR11_CTG3 SC fin 2,000 0 100
AL805916.7 RP23-164N15 MMCHR11_CTG3 SC fin 2,000 0 100
AL672030.10 RP23-199E12 MMCHR11_CTG3 SC fin 2,000 0 100
AL662810.16 RP23-42P24 MMCHR11_CTG3 SC fin 2,000 0 100
AL672018.6 RP23-365O24 MMCHR11_CTG3 SC fin 2,000 0 100
AL669823.7 RP23-456O1 MMCHR11_CTG3 SC fin 2,000 0 100
AL662783.13 RP23-378N18 MMCHR11_CTG3 SC fin 2,000 0 100
AL691457.14 RP23-17M4 MMCHR11_CTG3 SC fin 2,000 0 100
AL662786.5 RP23-340O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL731827.6 RP23-109M24 MMCHR11_CTG3 SC fin 2,000 0 100
AL928865.3 RP23-313B12 MMCHR11_CTG3 SC fin 2,000 0 100
AL672240.13 RP23-27I16 MMCHR11_CTG3 SC fin 2,000 0 100
AL731714.9 RP23-117H24 MMCHR11_CTG3 SC fin 2,000 0 100
BX255878.13 RP23-444O21 MMCHR11_CTG3 SC fin 2,000 0 100
AL929545.8 RP23-306I3 MMCHR11_CTG3 SC fin 2,000 0 100
BX470079.4 RP23-247N20 MMCHR11_CTG3 SC fin 2,000 0 100
BX255938.7 RP23-333B5 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02085099.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in BX255938.7 wgs 2,814 0 99.964 contained sequence
AL929547.13 RP23-180L23 MMCHR11_CTG3 SC fin 2,000 0 100
BX000436.5 RP23-182F17 MMCHR11_CTG3 SC fin 2,000 0 100
AC083815.17 RP23-270L8 MMCHR11_CTG3 BCM fin 2,000 0 100
AL929272.10 RP23-69H10 MMCHR11_CTG3 SC fin 2,000 0 100
BX511177.3 RP23-314I24 MMCHR11_CTG3 SC fin 2,000 0 100
AL935328.14 RP23-227C11 MMCHR11_CTG3 SC fin 2,000 0 100
AL929414.5 RP23-222A19 MMCHR11_CTG3 SC fin 2,000 0 100
BX248578.6 RP23-227K23 MMCHR11_CTG3 SC fin 2,000 0 100
BX088648.9 RP23-156M16 MMCHR11_CTG3 SC fin 2,000 0 99.950
BX005086.9 RP23-149N22 MMCHR11_CTG3 SC fin 2,000 0 100
BX537325.2 RP24-97L20 MMCHR11_CTG3 SC fin 2,000 0 100
BX000995.12 RP23-106K17 MMCHR11_CTG3 SC fin 2,000 0 100
AL954353.14 RP23-156D8 MMCHR11_CTG3 SC fin 2,000 0 100
BX294111.4 RP23-414M14 MMCHR11_CTG3 SC fin 2,000 0 100
AL954167.4 RP23-300M3 MMCHR11_CTG3 SC fin 2,000 0 100
BX001009.12 RP23-312H11 MMCHR11_CTG3 SC fin 2,000 0 100
BX649199.1 RP23-216D11 MMCHR11_CTG3 SC fin 2,000 0 100
BX255910.3 RP23-398G11 MMCHR11_CTG3 SC fin 2,000 0 100
AL929280.6 RP23-67M20 MMCHR11_CTG3 SC fin 2,000 0 100
BX284627.4 RP23-135G12 MMCHR11_CTG3 SC fin 2,000 0 100
AL954346.7 RP23-298H6 MMCHR11_CTG3 SC fin 2,000 0 100
BX321895.4 RP23-453L9 MMCHR11_CTG3 SC fin 2,000 0 100
BX000351.17 RP23-313I4 MMCHR11_CTG3 SC fin 2,000 0 100
BX294116.3 RP23-393O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL935054.11 RP23-280A12 MMCHR11_CTG3 SC fin 2,000 0 100
BX284634.8 RP23-92B18 MMCHR11_CTG3 SC fin 2,000 0 100
AL929371.6 RP23-176O5 MMCHR11_CTG3 SC fin 2,000 0 100
BX005100.9 RP23-76P22 MMCHR11_CTG3 SC fin 2,000 0 100
AL731792.12 RP23-189P1 MMCHR11_CTG3 SC fin 2,000 0 100
AL672225.15 RP23-384G1 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02168822.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL672225.15 wgs 27,616 4 99.996
BX248520.2 RP24-240G1 MMCHR11_CTG3 SC fin 2,000 0 100
AL844147.9 RP23-145N4 MMCHR11_CTG3 SC fin 2,000 0 100
AL732595.13 RP23-87I3 MMCHR11_CTG3 SC fin 2,000 0 100
AL732388.9 RP23-358M10 MMCHR11_CTG3 SC fin 2,000 0 100
AL662891.9 RP23-20N14 MMCHR11_CTG3 SC fin 2,000 0 100
AL732621.11 RP23-299D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL646095.27 RP23-17P18 MMCHR11_CTG3 SC fin 2,000 0 100
AL669931.9 RP23-31D18 MMCHR11_CTG3 SC fin 2,000 0 100
BX322783.5 RP24-340J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL713921.15 RP23-475A8 MMCHR11_CTG3 SC fin 2,000 0 100
AL662793.10 RP23-186D6 MMCHR11_CTG3 SC fin 1,996 1 100 alignment length < 2000
AL669946.9 RP23-71G18 MMCHR11_CTG3 SC fin 2,000 0 100
AL929446.5 RP23-177M10 MMCHR11_CTG3 SC fin 2,000 0 100
BX248420.2 RP24-322D7 MMCHR11_CTG3 SC fin 2,000 0 100
AL662780.20 RP23-375M9 MMCHR11_CTG3 SC fin 1,791 0 100 alignment length < 2000
AL669844.20 RP23-395O6 MMCHR11_CTG3 SC fin 1,629 0 100 alignment length < 2000
AL669951.18 RP23-94F11 MMCHR11_CTG3 SC fin 2,000 0 100
AL732390.10 RP23-413O19 MMCHR11_CTG3 SC fin 2,000 0 100
AL772409.4 RP23-323L8 MMCHR11_CTG3 SC fin 2,000 0 100
AL683843.9 RP23-217E1 MMCHR11_CTG3 SC fin 2,000 0 100
AL669814.16 RP23-431J18 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02168542.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL669814.16 wgs 13,428 3 99.993 >0 gap of 25bp or more, not simple sequence
AL662902.14 RP23-417K16 MMCHR11_CTG3 SC fin 2,000 0 100
AL928606.3 RP23-331O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL731867.27 RP23-73A4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645909.11 RP23-216O18 MMCHR11_CTG3 SC fin 2,000 0 100
AL671971.8 RP23-32J15 MMCHR11_CTG3 SC fin 2,000 0 100
AL669849.19 RP23-341O22 MMCHR11_CTG3 SC fin 2,000 0 100
   LO016981.1 WI1-2099G10 MMCHR11_CTG3 CONTAINED_TURNOUT in LXEJ02000379.1 fin 13,568 1 100 contained sequence
LXEJ02000379.1 ? MMCHR11_CTG3 None wgs
   GAP type-2 1000 OPTICAL MAP
LXEJ02010743.1 ? MMCHR11_CTG3 None wgs
   LO016975.1 WI1-1942L15 MMCHR11_CTG3 CONTAINED_TURNOUT in LXEJ02010743.1 fin 10,407 16 99.337 contained sequence
CT005230.3 CH25-577N17 MMCHR11_CTG3 SC fin 2,000 0 100
CR762384.6 RP24-172B15 MMCHR11_CTG3 SC fin 2,000 0 100
CR392356.5 RP23-329D21 MMCHR11_CTG3 SC fin 2,000 0 100
AL772234.5 RP23-413M22 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL732630.6 RP23-315J17 MMCHR11_CTG3 SC fin 2,000 0 100
AL669839.13 RP23-171P1 MMCHR11_CTG3 SC fin 2,000 0 100
AL669856.6 RP23-46I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL732401.6 RP23-405K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL731688.14 RP23-291K6 MMCHR11_CTG3 SC fin 2,000 0 100
AL596084.13 RP23-196B5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645912.18 RP23-134G19 MMCHR11_CTG3 SC fin 2,000 0 100
BX000433.3 RP23-444E18 MMCHR11_CTG3 SC fin 2,000 0 100
BX539311.8 RP24-538L10 MMCHR11_CTG3 SC fin 2,000 0 100
AL713919.11 RP23-41F14 MMCHR11_CTG3 SC fin 2,000 0 100
AL713915.10 RP23-437C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL732293.14 RP23-360J13 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL646001.7 RP23-10B17 MMCHR11_CTG3 SC fin 2,000 0 100
AL713956.13 RP23-412C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL646101.7 RP23-145E14 MMCHR11_CTG3 SC fin 2,000 0 100
AL662909.9 RP23-189I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL773532.5 RP23-48F16 MMCHR11_CTG3 SC fin 2,000 0 100
AL731800.11 RP23-358E7 MMCHR11_CTG3 SC fin 2,000 0 100
AL732516.6 RP23-403H17 MMCHR11_CTG3 SC fin 2,000 0 100
AL669903.16 RP23-72A14 MMCHR11_CTG3 SC fin 2,000 0 100
AL808020.3 RP23-387B24 MMCHR11_CTG3 SC fin 2,000 0 100
CT008507.3 CH25-94C24 MMCHR11_CTG3 SC fin 1,999 0 100 alignment length < 2000
CT009692.6 RP23-262K19 MMCHR11_CTG3 SC fin 2,001 0 100
CT008509.3 CH25-296J8 MMCHR11_CTG3 SC fin 2,000 0 100
AL663065.9 RP23-248G11 MMCHR11_CTG3 SC fin 2,000 0 100
AL669826.10 RP23-5N19 MMCHR11_CTG3 SC fin 2,000 0 100
AL713962.14 RP23-3D5 MMCHR11_CTG3 SC fin 2,000 0 100
BX323019.3 RP24-331H6 MMCHR11_CTG3 SC fin 2,000 0 100
AL731673.8 RP23-452E21 MMCHR11_CTG3 SC fin 2,000 0 100
AL662858.15 RP23-166O21 MMCHR11_CTG3 SC fin 2,000 0 100
BX000445.8 RP23-381O5 MMCHR11_CTG3 SC fin 2,000 0 100
AL662882.13 RP23-187N13 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02113846.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662882.13 wgs 45,697 2 99.993 contained sequence
BX284633.6 RP23-15F8 MMCHR11_CTG3 SC fin 2,000 0 100
AL935275.7 RP23-44F9 MMCHR11_CTG3 SC fin 2,000 0 100
AL663060.6 RP23-239H6 MMCHR11_CTG3 SC fin 2,000 0 100
AL714016.8 RP23-229J16 MMCHR11_CTG3 SC fin 2,000 0 100
AL669928.8 RP23-76F22 MMCHR11_CTG3 SC fin 2,000 0 100
AL627213.16 RP23-29B10 MMCHR11_CTG3 SC fin 2,000 0 100
AL645564.6 RP23-35N22 MMCHR11_CTG3 SC fin 2,000 0 100
AL662841.10 RP23-31O3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645973.8 RP23-287B6 MMCHR11_CTG3 SC fin 2,000 0 100
BX321911.6 RP23-255M6 MMCHR11_CTG3 SC fin 2,000 0 100
AL646055.10 RP23-382C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL645476.26 RP23-70L6 MMCHR11_CTG3 SC fin 2,000 0 100
AL662929.15 RP23-435E13 MMCHR11_CTG3 SC fin 2,000 0 100
BX324000.7 RP24-76C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL954336.3 RP23-223H19 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02113679.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL954336.3 wgs 15,576 1 99.994 contained sequence
AL646091.4 RP23-101K9 MMCHR11_CTG3 SC fin 2,000 0 100
AL669943.9 RP23-286C19 MMCHR11_CTG3 SC fin 2,000 0 100
BX001000.5 RP24-269N13 MMCHR11_CTG3 SC fin 2,000 0 100
BX511117.4 RP23-143C1 MMCHR11_CTG3 SC fin 2,000 0 100
BX323061.6 RP24-267L10 MMCHR11_CTG3 SC fin 2,000 0 100
BX323871.8 RP24-107M14 MMCHR11_CTG3 SC fin 2,000 0 100
BX284629.6 RP23-227J8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645751.12 RP23-396K15 MMCHR11_CTG3 SC fin 2,000 0 100
AL645752.9 RP23-244K22 MMCHR11_CTG3 SC fin 2,000 0 100
AL645823.12 RP23-288I22 MMCHR11_CTG3 SC fin 2,000 0 100
AL627444.10 RP23-307A1 MMCHR11_CTG3 SC fin 2,000 0 100
AL929278.2 RP23-277L11 MMCHR11_CTG3 SC fin 2,000 0 100
AL645964.8 RP23-335G10 MMCHR11_CTG3 SC fin 1,611 0 100 alignment length < 2000
BX005080.7 RP23-333M14 MMCHR11_CTG3 SC fin 2,000 0 100
AL672181.11 RP23-223D16 MMCHR11_CTG3 SC fin 2,000 0 100
AL772227.5 RP23-1O16 MMCHR11_CTG3 SC fin 2,000 0 100
AL935157.2 RP24-242M17 MMCHR11_CTG3 SC fin 2,000 0 100
AL772225.5 RP23-235D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL670472.7 RP23-26M1 MMCHR11_CTG3 SC fin 2,000 0 100
AL954731.2 RP24-295J6 MMCHR11_CTG3 SC fin 2,000 0 100
AL732633.6 RP23-320E20 MMCHR11_CTG3 SC fin 2,000 0 100
AL669911.16 RP23-65G8 MMCHR11_CTG3 SC fin 2,000 0 100
AL837514.5 RP23-152E24 MMCHR11_CTG3 SC fin 2,000 0 100
AL669816.3 RP23-266C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL669832.7 RP23-50O9 MMCHR11_CTG3 SC fin 2,000 0 100
AL607030.15 RP23-304O12 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL669944.8 RP23-388G23 MMCHR11_CTG3 SC fin 2,000 0 100
AL603913.14 RP23-103H9 MMCHR11_CTG3 SC fin 2,000 0 100
AL645607.9 RP23-298N21 MMCHR11_CTG3 SC fin 2,000 0 100
AL732622.4 RP23-277G3 MMCHR11_CTG3 SC fin 2,000 0 100
AL672013.9 RP23-32G8 MMCHR11_CTG3 SC fin 2,000 0 100
AL669871.18 RP23-48J15 MMCHR11_CTG3 SC fin 2,000 0 100
AL731863.7 RP23-442P4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645855.25 RP23-122N23 MMCHR11_CTG3 SC fin 2,000 0 100
AL929002.4 RP23-369A3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645582.22 RP23-302J15 MMCHR11_CTG3 SC fin 2,000 0 100
AL645948.10 RP23-298M7 MMCHR11_CTG3 SC fin 2,000 0 100
AL663031.15 RP23-29H5 MMCHR11_CTG3 SC fin 2,000 0 100
AL713958.11 RP23-370F7 MMCHR11_CTG3 SC fin 2,000 0 100
AL662806.20 RP23-273O7 MMCHR11_CTG3 SC fin 2,000 0 100
AL669948.8 RP23-248K2 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02113301.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL669948.8 wgs 22,612 4 99.987 contained sequence
AL669892.11 RP23-31K14 MMCHR11_CTG3 SC fin 2,000 0 100
AL669845.9 RP23-43C21 MMCHR11_CTG3 SC fin 2,000 0 100
AL844598.6 RP23-389D24 MMCHR11_CTG3 SC fin 2,000 0 100
BX324120.5 RP24-405D9 MMCHR11_CTG3 SC fin 2,000 0 100
AL772321.6 RP23-387J7 MMCHR11_CTG3 SC fin 2,000 0 100
AL732402.5 RP23-402I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL669857.7 RP23-291B8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645993.7 RP23-116K9 MMCHR11_CTG3 SC fin 2,000 0 100
AL662919.10 RP23-109K11 MMCHR11_CTG3 SC fin 2,000 0 100
AL645566.15 RP23-398M13 MMCHR11_CTG3 SC fin 2,000 0 100
BX005243.3 RP23-269L17 MMCHR11_CTG3 SC fin 2,000 0 100
AL844584.4 RP23-309F17 MMCHR11_CTG3 SC fin 2,000 0 100
AL954169.2 RP23-26H20 MMCHR11_CTG3 SC fin 2,000 0 100
AL646056.18 RP23-412O18 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02113182.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL646056.18 wgs 38,400 2 99.997
AL645967.20 RP23-82J18 MMCHR11_CTG3 SC fin 2,000 0 100
AL645784.20 RP23-11C7 MMCHR11_CTG3 SC fin 600 0 100 alignment length < 2000
AL669829.11 RP23-273N19 MMCHR11_CTG3 SC fin 2,000 0 100
AL645849.17 RP23-14F5 MMCHR11_CTG3 SC fin 2,000 0 100
AL627237.44 RP23-269N23 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL645688.12 RP23-54N20 MMCHR11_CTG3 SC fin 2,000 0 100
BX294093.3 RP23-214I10 MMCHR11_CTG3 SC fin 2,000 0 100
AL606829.13 RP23-10M12 MMCHR11_CTG3 SC fin 2,000 0 100
AL645987.7 RP23-27B20 MMCHR11_CTG3 SC fin 2,000 0 100
AL646088.23 RP23-58E13 MMCHR11_CTG3 SC fin 1,000 0 100 alignment length < 2000
AL606479.16 RP23-10G21 MMCHR11_CTG3 SC fin 2,000 0 100
AL645913.12 RP23-194G14 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02062321.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645913.12 wgs 11,831 0 99.992 contained sequence
AL627187.13 RP23-319B15 MMCHR11_CTG3 SC fin 2,000 0 100
AL646002.6 RP23-237P10 MMCHR11_CTG3 SC fin 2,000 0 100
AL645904.13 RP23-121P11 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02006726.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645904.13 wgs 193,673 22 99.999 contained sequence
AL645639.17 RP23-370G8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645611.9 RP23-432O24 MMCHR11_CTG3 SC fin 2,000 0 100
AL627215.12 RP23-292E3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645962.22 RP23-217L7 MMCHR11_CTG3 SC fin 2,000 0 100
AL669827.5 RP23-350D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL645907.9 RP23-9N7 MMCHR11_CTG3 SC fin 2,000 0 100
AL662916.8 RP23-442C24 MMCHR11_CTG3 SC fin 2,000 0 100
AL662843.11 RP23-411E22 MMCHR11_CTG3 SC fin 2,000 0 100
AL645602.14 RP23-79E13 MMCHR11_CTG3 SC fin 2,000 0 100
AL669920.15 RP23-263C23 MMCHR11_CTG3 SC fin 2,000 0 100
BX284645.3 RP24-320J23 MMCHR11_CTG3 SC fin 2,000 0 100
AL935177.6 RP23-46N3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645862.14 RP23-223A11 MMCHR11_CTG3 SC fin 2,000 0 100
AL713864.13 RP23-3N14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645589.24 RP23-289H16 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02005117.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645589.24 wgs 165,498 36 99.998 >0 gap of 500bp or more
AL669817.7 RP23-295J8 MMCHR11_CTG3 SC fin 2,000 0 100
AL662855.19 RP23-388J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL662836.7 RP23-313L19 MMCHR11_CTG3 SC fin 2,000 0 100
AL604002.8 RP23-386F6 MMCHR11_CTG3 SC fin 2,000 0 100
AL596382.12 RP23-337J7 MMCHR11_CTG3 SC fin 2,000 0 100
AL592489.13 RP23-226J16 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02062115.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL592489.13 wgs 15,469 2 99.994
AL596095.18 RP23-188H3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645741.15 RP23-239O19 MMCHR11_CTG3 SC fin 2,000 0 100
AL596182.29 RP23-303F24 MMCHR11_CTG3 SC fin 2,000 0 100
BX323055.5 RP24-427C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596444.10 RP23-354D12 MMCHR11_CTG3 SC fin 2,000 0 100
AL596103.22 RP23-309E16 MMCHR11_CTG3 SC fin 2,000 0 100
AL603822.9 RP23-428P14 MMCHR11_CTG3 SC fin 2,000 0 100
AL596127.12 RP23-297J14 MMCHR11_CTG3 SC fin 2,000 0 100
AL607091.12 RP23-287F5 MMCHR11_CTG3 SC fin 2,000 0 100
AL954817.9 RP24-84L18 MMCHR11_CTG3 SC fin 2,000 0 100
AL593846.15 RP23-171H16 MMCHR11_CTG3 SC fin 2,000 0 100
AL772357.9 RP23-173F16 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02008159.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL772357.9 wgs 39,260 4 99.997 contained sequence
AL713870.26 RP24-239D8 MMCHR11_CTG3 SC fin 2,000 0 100
AL929425.4 RP23-53C8 MMCHR11_CTG3 SC fin 2,000 0 100
AL772268.6 RP23-465I4 MMCHR11_CTG3 SC fin 2,000 0 100
AL596207.10 RP23-336J1 MMCHR11_CTG3 SC fin 2,000 0 100
AL662839.15 RP23-472O5 MMCHR11_CTG3 SC fin 1,996 1 99.950 alignment length < 2000
AL627426.19 RP23-168D2 MMCHR11_CTG3 SC fin 2,000 0 100
AL662792.21 RP23-52L14 MMCHR11_CTG3 SC fin 2,000 0 100
AL671969.39 RP23-339O7 MMCHR11_CTG3 SC fin 2,000 0 100
AL606506.11 RP23-11A24 MMCHR11_CTG3 SC fin 2,000 0 100
AL662846.18 RP23-399N2 MMCHR11_CTG3 SC fin 2,000 0 100
AL714020.5 RP23-321G2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645908.9 RP23-24A24 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02158935.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645908.9 wgs 31,135 2 99.997 contained sequence
AL731677.9 RP23-41J17 MMCHR11_CTG3 SC fin 2,000 0 100
AL663055.13 RP23-102H8 MMCHR11_CTG3 SC fin 1,988 1 100 alignment length < 2000
BX248119.5 RP23-240I8 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02158913.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in BX248119.5 wgs 21,785 2 99.995 contained sequence
AL954821.11 RP23-415G6 MMCHR11_CTG3 SC fin 2,000 0 100
AL672177.9 RP23-292D8 MMCHR11_CTG3 SC fin 2,000 0 100
AL672236.18 RP23-206L21 MMCHR11_CTG3 SC fin 2,000 0 100
AL772169.3 RP23-115H17 MMCHR11_CTG3 SC fin 2,000 0 100
AL662868.15 RP23-144P24 MMCHR11_CTG3 SC fin 2,000 0 100
AL732587.8 RP23-268K22 MMCHR11_CTG3 SC fin 2,000 0 100
AL928702.7 RP23-292J9 MMCHR11_CTG3 SC fin 2,000 0 100
AL672182.18 RP23-293I3 MMCHR11_CTG3 SC fin 2,000 0 100
AL928857.15 RP24-499A8 MMCHR11_CTG3 SC fin 2,000 0 100
AL845463.7 RP23-386K17 MMCHR11_CTG3 SC fin 2,000 0 100
AL663107.13 RP23-465K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL645802.11 RP23-128D9 MMCHR11_CTG3 SC fin 2,000 0 100
AL662903.10 RP23-419P16 MMCHR11_CTG3 SC fin 2,000 0 100
AL662809.14 RP23-441I8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645854.10 RP23-192P17 MMCHR11_CTG3 SC fin 1,349 0 100 alignment length < 2000
   AEKQ02158737.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645854.10 wgs 4,883 0 99.980 contained sequence
AL713994.15 RP23-378H5 MMCHR11_CTG3 SC fin 2,000 0 100
BX255278.2 RP23-51J10 MMCHR11_CTG3 SC fin 2,000 0 100
AL592522.12 RP23-210M6 MMCHR11_CTG3 SC fin 2,000 0 100
AL596204.8 RP23-180B18 MMCHR11_CTG3 SC fin 29,860 0 100
AC068808.20 RP23-479J7 MMCHR11_CTG3 BCM fin 112,325 6 99.999 simple sequence in gap
AL603710.8 RP23-247B13 MMCHR11_CTG3 SC fin 2,000 0 100
AL645526.14 RP23-60F20 MMCHR11_CTG3 SC fin 2,000 0 100
AL669954.6 RP23-456O18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596090.11 RP23-135F6 MMCHR11_CTG3 SC fin 2,000 0 100
AL596386.16 RP23-331I21 MMCHR11_CTG3 SC fin 2,000 0 100
AL596215.7 RP23-278I21 MMCHR11_CTG3 SC fin 2,000 0 100
AL603830.7 RP23-467E19 MMCHR11_CTG3 SC fin 2,000 0 100
AL646093.9 RP23-55I2 MMCHR11_CTG3 SC fin 2,000 0 100
AL672172.7 RP23-133K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL669884.7 RP23-451A6 MMCHR11_CTG3 SC fin 2,000 0 100
AL604029.12 RP23-155J3 MMCHR11_CTG3 SC fin 2,000 0 100
AL596209.13 RP23-278F12 MMCHR11_CTG3 SC fin 2,000 0 100
AL646042.14 RP23-70A15 MMCHR11_CTG3 SC fin 2,000 0 100
BX284675.5 RP23-286P12 MMCHR11_CTG3 SC fin 2,000 0 100
AL592080.26 RP23-102H10 MMCHR11_CTG3 SC fin 2,000 0 100
AL596110.15 RP23-330N10 MMCHR11_CTG3 SC fin 2,000 0 100
BX248411.3 RP23-130D7 MMCHR11_CTG3 SC fin 2,000 0 100
CR392047.1 WI1-2824I24 MMCHR11_CTG3 SC fin 2,000 0 100
BX470084.10 RP23-239A15 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL596181.10 RP23-234K24 MMCHR11_CTG3 SC fin 2,000 0 100
AL627097.6 RP23-59B16 MMCHR11_CTG3 SC fin 2,000 0 100
AL645847.15 RP23-428I5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645738.14 RP23-332C5 MMCHR11_CTG3 SC fin 2,000 0 100
AL592215.12 RP23-172P19 MMCHR11_CTG3 SC fin 2,000 0 100
AL606661.23 RP23-355P23 MMCHR11_CTG3 SC fin 2,000 0 100
AL607064.16 RP23-314K19 MMCHR11_CTG3 SC fin 2,000 0 100
AL596264.13 RP23-232G8 MMCHR11_CTG3 SC fin 2,000 0 100
AL691510.11 RP23-125C16 MMCHR11_CTG3 SC fin 2,000 0 100
AL603702.14 RP23-406A14 MMCHR11_CTG3 SC fin 2,000 0 100
AL603889.5 RP23-407M20 MMCHR11_CTG3 SC fin 2,000 0 100
AL663033.10 RP23-78H18 MMCHR11_CTG3 SC fin 2,000 0 100
AL663039.18 RP23-50H23 MMCHR11_CTG3 SC fin 2,000 0 100
AL646051.19 RP23-222M22 MMCHR11_CTG3 SC fin 2,000 0 100
AL672141.12 RP23-219C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL663035.8 RP23-432G17 MMCHR11_CTG3 SC fin 2,000 0 100
AL683821.5 RP23-151N3 MMCHR11_CTG3 SC fin 2,000 0 100
AL663029.11 RP23-355B12 MMCHR11_CTG3 SC fin 2,000 0 100
AL663045.7 RP23-219K7 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02081307.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL663045.7 wgs 15,325 1 99.961 contained sequence
AL669846.11 RP23-298L23 MMCHR11_CTG3 SC fin 2,000 0 100
AL672143.12 RP23-467P3 MMCHR11_CTG3 SC fin 2,000 0 100
AL646045.9 RP23-130O14 MMCHR11_CTG3 SC fin 2,000 0 100
AL662895.7 RP23-340L19 MMCHR11_CTG3 SC fin 2,000 0 100
AL663069.10 RP23-410P8 MMCHR11_CTG3 SC fin 1,000 0 100 alignment length < 2000
AL596025.22 RP23-215H18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596187.15 RP23-287H9 MMCHR11_CTG3 SC fin 2,000 0 100
AL731719.6 RP23-237N8 MMCHR11_CTG3 SC fin 2,000 0 100
AL663083.5 RP23-280G3 MMCHR11_CTG3 SC fin 2,000 0 100
AL663051.15 RP23-450J13 MMCHR11_CTG3 SC fin 2,000 0 100
AL669968.10 RP23-475F22 MMCHR11_CTG3 SC fin 2,000 0 100
AL671863.6 RP23-88N4 MMCHR11_CTG3 SC fin 2,000 0 100
AL669835.9 RP23-151P20 MMCHR11_CTG3 SC fin 2,000 0 100
AL645988.6 RP23-67J22 MMCHR11_CTG3 SC fin 2,000 0 100
AL596129.27 RP23-294E23 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02081423.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL596129.27 wgs 7,545 1 99.987 contained sequence
BX255958.1 RP23-321N5 MMCHR11_CTG3 SC fin 2,000 0 100
AL596255.17 RP23-6K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL662883.8 RP23-195I1 MMCHR11_CTG3 SC fin 2,000 0 100
AL646097.25 RP23-338M9 MMCHR11_CTG3 SC fin 2,000 0 100
AL732570.12 RP23-464J2 MMCHR11_CTG3 SC fin 2,000 0 100
AL663076.17 RP23-6I12 MMCHR11_CTG3 SC fin 1,992 1 100 alignment length < 2000
AL669842.11 RP23-25D18 MMCHR11_CTG3 SC fin 2,000 0 100
AL662894.11 RP23-467C13 MMCHR11_CTG3 SC fin 2,000 0 100
AL606831.17 RP23-432M23 MMCHR11_CTG3 SC fin 2,000 0 100
BX001016.4 RP23-344J1 MMCHR11_CTG3 SC fin 2,000 0 100
AL645644.8 RP23-400O5 MMCHR11_CTG3 SC fin 2,000 0 100
AL603662.11 RP23-396M19 MMCHR11_CTG3 SC fin 2,000 0 100
AL714000.10 RP23-153N12 MMCHR11_CTG3 SC fin 2,000 0 100
AL645902.6 RP23-19I2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645527.20 RP23-26L6 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02005017.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645527.20 wgs 261,184 34 99.999 contained sequence
AL596125.27 RP23-5O23 MMCHR11_CTG3 SC fin 2,000 0 100
AL731687.13 RP23-56I20 MMCHR11_CTG3 SC fin 2,000 0 100
AL603707.5 RP23-422L16 MMCHR11_CTG3 SC fin 2,000 0 100
AL845465.2 RP23-119B10 MMCHR11_CTG3 SC fin 2,000 0 100
AL596185.12 RP23-172M21 MMCHR11_CTG3 SC fin 2,000 0 100
AL669869.10 RP23-198E14 MMCHR11_CTG3 SC fin 2,000 0 99.950
BX294101.5 RP24-370E7 MMCHR11_CTG3 SC fin 2,000 0 100
AL596096.7 RP23-42P20 MMCHR11_CTG3 SC fin 2,000 0 100
AL663043.7 RP23-79O1 MMCHR11_CTG3 SC fin 2,000 0 100
AL592547.9 RP23-122P1 MMCHR11_CTG3 SC fin 2,000 0 100
AL596117.19 RP23-326P7 MMCHR11_CTG3 SC fin 2,000 0 100
AL669820.2 RP23-24J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL596136.5 RP23-83I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL662908.7 RP23-478O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL663042.5 RP23-400P12 MMCHR11_CTG3 SC fin 2,000 0 100
AL662921.10 RP23-397K10 MMCHR11_CTG3 SC fin 2,000 0 100
AL663086.6 RP23-64N1 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
BX511104.2 RP23-73C1 MMCHR11_CTG3 SC fin 2,000 0 99.950
AL672010.8 RP23-223C15 MMCHR11_CTG3 SC fin 2,000 0 100
AL662803.11 RP23-215N10 MMCHR11_CTG3 SC fin 2,000 0 100
BX321917.4 RP23-401C17 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02081761.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in BX321917.4 wgs 2,713 0 99.963
BX119911.6 RP23-207N15 MMCHR11_CTG3 SC fin 2,000 0 100
AL929071.6 RP24-450M24 MMCHR11_CTG3 SC fin 2,000 0 100
AL662812.12 RP23-48A2 MMCHR11_CTG3 SC fin 2,000 0 100
AL808023.3 RP23-32B6 MMCHR11_CTG3 SC fin 2,000 0 100
AL663082.5 RP23-327G1 MMCHR11_CTG3 SC fin 2,000 0 100
BX284667.6 RP24-360O20 MMCHR11_CTG3 SC fin 2,000 0 100
AL670399.4 RP23-263M10 MMCHR11_CTG3 SC fin 2,000 0 100
AL663116.7 RP23-214D6 MMCHR11_CTG3 SC fin 2,000 0 100
AL645739.9 RP23-213I10 MMCHR11_CTG3 SC fin 2,000 0 100
AL663024.7 RP23-103M20 MMCHR11_CTG3 SC fin 2,000 0 100
AL604046.8 RP23-206D6 MMCHR11_CTG3 SC fin 2,000 0 100
AL603923.7 RP23-180L15 MMCHR11_CTG3 SC fin 2,000 0 100
AL606482.14 RP23-360H16 MMCHR11_CTG3 SC fin 2,000 0 100
AL611937.6 RP23-221M24 MMCHR11_CTG3 SC fin 2,000 0 100
AL604065.7 RP23-20M18 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02081916.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL604065.7 wgs 53,580 6 99.994 contained sequence
AL627348.12 RP23-421L2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645971.12 RP23-378J19 MMCHR11_CTG3 SC fin 2,000 0 100
AL607024.17 RP23-194P5 MMCHR11_CTG3 SC fin 2,000 0 100
AL604066.9 RP23-174M12 MMCHR11_CTG3 SC fin 2,000 0 100
AL714018.5 RP23-405K15 MMCHR11_CTG3 SC fin 2,000 0 100
AL662892.11 RP23-408L15 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02004834.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662892.11 wgs 106,131 15 99.999 contained sequence
AL603905.19 RP23-143A14 MMCHR11_CTG3 SC fin 2,000 0 100
AL603834.6 RP23-113D4 MMCHR11_CTG3 SC fin 1,000 0 100 alignment length < 2000
AL591496.13 RP23-384C18 MMCHR11_CTG3 SC fin 2,000 0 100
AL591440.7 RP23-136K12 MMCHR11_CTG3 SC fin 2,000 0 100
AL669897.15 RP23-78H4 MMCHR11_CTG3 SC fin 2,000 0 100
AL731710.4 RP23-236D18 MMCHR11_CTG3 SC fin 2,000 0 100
AL645569.21 RP23-96I9 MMCHR11_CTG3 SC fin 2,000 0 100
AL591129.24 RP23-147P4 MMCHR11_CTG3 SC fin 2,000 0 100
AL806529.6 RP23-234M1 MMCHR11_CTG3 SC fin 2,000 0 100
AL663050.11 RP23-48B14 MMCHR11_CTG3 SC fin 2,000 0 100
AL591143.11 RP23-210L24 MMCHR11_CTG3 SC fin 2,000 0 100
BX000359.7 RP23-343C18 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL645479.19 RP23-396O3 MMCHR11_CTG3 SC fin 2,000 0 100
AL603842.9 RP23-100P23 MMCHR11_CTG3 SC fin 2,000 0 100
BX321897.4 RP23-146B22 MMCHR11_CTG3 SC fin 2,000 0 100
AL663066.12 RP23-416K12 MMCHR11_CTG3 SC fin 2,000 0 100
AL606724.17 RP23-285D3 MMCHR11_CTG3 SC fin 2,000 0 100
AL607072.15 RP23-81E16 MMCHR11_CTG3 SC fin 2,000 0 100
AL645588.7 RP23-452K19 MMCHR11_CTG3 SC fin 2,000 0 100
AL591136.20 RP23-273P3 MMCHR11_CTG3 SC fin 2,000 0 100
AL663059.5 RP23-331C1 MMCHR11_CTG3 SC fin 2,000 0 100
AL591065.17 RP23-199H17 MMCHR11_CTG3 SC fin 2,000 0 100
AL845484.9 RP23-336L14 MMCHR11_CTG3 SC fin 2,000 0 100
AL669840.5 RP23-43J1 MMCHR11_CTG3 SC fin 2,000 0 100
AL591070.19 RP23-185A18 MMCHR11_CTG3 SC fin 2,000 0 100
AL591131.9 RP23-151A11 MMCHR11_CTG3 SC fin 2,000 0 100
AL591177.14 RP23-399H5 MMCHR11_CTG3 SC fin 2,000 0 100
AL591376.11 RP23-404C20 MMCHR11_CTG3 SC fin 2,000 0 100
AL592185.35 RP23-341J22 MMCHR11_CTG3 SC fin 2,000 0 100
AL592551.10 RP23-12I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL591486.5 RP23-465D7 MMCHR11_CTG3 SC fin 2,000 0 100
AL672121.10 RP23-256H2 MMCHR11_CTG3 SC fin 2,000 0 100
AL591126.18 RP23-188A3 MMCHR11_CTG3 SC fin 2,000 0 100
AL672209.7 RP23-296N19 MMCHR11_CTG3 SC fin 2,000 0 100
AL591174.13 RP23-271B20 MMCHR11_CTG3 SC fin 2,000 0 100
AL731726.11 RP23-97P13 MMCHR11_CTG3 SC fin 2,000 0 100
AL591429.9 RP23-307I20 MMCHR11_CTG3 SC fin 2,000 0 100
AL591113.14 RP23-253E9 MMCHR11_CTG3 SC fin 2,000 0 100
AL672178.8 RP23-328O2 MMCHR11_CTG3 SC fin 2,000 0 100
AL663057.7 RP23-7J19 MMCHR11_CTG3 SC fin 2,000 0 100
AL591426.17 RP23-345E8 MMCHR11_CTG3 SC fin 2,000 0 100
AL591146.21 RP23-252E4 MMCHR11_CTG3 SC fin 2,000 0 100
AL591410.8 RP23-96I2 MMCHR11_CTG3 SC fin 2,000 0 100
AL663054.9 RP23-480G5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645842.15 RP23-20A9 MMCHR11_CTG3 SC fin 2,000 0 100
AL663025.7 RP23-404B19 MMCHR11_CTG3 SC fin 2,000 0 100
AL645626.10 RP23-397J5 MMCHR11_CTG3 SC fin 2,000 0 100
AL607083.17 RP23-206E3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645943.19 RP23-130E22 MMCHR11_CTG3 SC fin 2,000 0 100
AL627343.16 RP23-382J14 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02179265.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL627343.16 wgs 68,315 5 99.996 contained sequence
AL928666.7 RP23-216G14 MMCHR11_CTG3 SC fin 2,000 0 100
AL626807.7 RP23-350G1 MMCHR11_CTG3 SC fin 2,000 0 100
AL645596.7 RP23-301E19 MMCHR11_CTG3 SC fin 2,000 0 100
AL713860.12 RP23-446K18 MMCHR11_CTG3 SC fin 2,000 0 100
AL731866.8 RP23-37F22 MMCHR11_CTG3 SC fin 2,000 0 100
AL645797.11 RP23-153J5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645969.20 RP23-101H2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645594.9 RP23-316C11 MMCHR11_CTG3 SC fin 2,000 0 100
AL646089.6 RP23-169P3 MMCHR11_CTG3 SC fin 2,000 0 100
AL603745.16 RP23-392I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL669916.7 RP23-308N3 MMCHR11_CTG3 SC fin 2,000 0 100
AL603711.6 RP23-381B19 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02167340.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL603711.6 wgs 45,369 3 99.998 contained sequence
AL663096.16 RP23-249K18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596122.14 RP23-320E6 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02167359.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL596122.14 wgs 57,019 7 99.998 contained sequence
AL663075.6 RP23-430I21 MMCHR11_CTG3 SC fin 1,997 1 100 alignment length < 2000
AL669868.16 RP23-304H7 MMCHR11_CTG3 SC fin 2,000 0 100
AL645615.14 RP23-395B22 MMCHR11_CTG3 SC fin 2,000 0 100
AL596447.16 RP23-340N22 MMCHR11_CTG3 SC fin 2,000 0 100
AL596252.11 RP23-123O10 MMCHR11_CTG3 SC fin 2,000 0 99.950
AL672252.11 RP24-211A17 MMCHR11_CTG3 SC fin 2,000 0 100
AL603708.13 RP23-381C21 MMCHR11_CTG3 SC fin 2,000 0 100
AL596083.21 RP23-293L24 MMCHR11_CTG3 SC fin 2,000 0 100
AL645623.13 RP23-391K14 MMCHR11_CTG3 SC fin 2,000 0 100
AL669859.5 RP23-167D6 MMCHR11_CTG3 SC fin 2,000 0 100
AL596183.11 RP23-286B12 MMCHR11_CTG3 SC fin 2,000 0 100
BX323026.5 RP24-95F14 MMCHR11_CTG3 SC fin 2,000 0 100
AL604024.7 RP23-421F23 MMCHR11_CTG3 SC fin 2,000 0 100
BX322602.4 RP23-345D14 MMCHR11_CTG3 SC fin 2,000 0 100
AL596324.7 RP23-324M14 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL662910.6 RP23-351G6 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02167496.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662910.6 wgs 14,002 0 99.993
AL592465.8 RP23-36C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645690.7 RP23-16P8 MMCHR11_CTG3 SC fin 2,000 0 100
AL592065.7 RP23-50E4 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02167506.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL592065.7 wgs 22,666 0 99.996 contained sequence
AL596256.14 RP23-259D24 MMCHR11_CTG3 SC fin 2,000 0 100
AL604063.4 RP23-467J12 MMCHR11_CTG3 SC fin 2,000 0 100
AL592222.11 RP23-366M19 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02004109.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL592222.11 wgs 160,782 12 99.999 contained sequence
AL596111.7 RP23-188E9 MMCHR11_CTG3 SC fin 2,000 0 100
AL929439.6 RP23-207J10 MMCHR11_CTG3 SC fin 2,000 0 100
AL713917.6 RP23-352L3 MMCHR11_CTG3 SC fin 2,000 0 100
BX000355.5 RP23-475B18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596130.13 RP23-209O5 MMCHR11_CTG3 SC fin 2,000 0 100
AL669902.8 RP23-459P8 MMCHR11_CTG3 SC fin 2,000 0 100
AL596086.9 RP23-168C20 MMCHR11_CTG3 SC fin 2,000 0 100
AL604022.21 RP23-449P23 MMCHR11_CTG3 SC fin 2,000 0 100
AL606805.21 RP23-449F16 MMCHR11_CTG3 SC fin 2,000 0 100
AL604044.11 RP23-16C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL593853.12 RP23-199A2 MMCHR11_CTG3 SC fin 2,000 0 100
AL929089.5 RP24-402O2 MMCHR11_CTG3 SC fin 2,000 0 100
AL732539.6 RP23-255E6 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02167679.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL732539.6 wgs 58,800 7 99.998 contained sequence
BX572644.6 RP24-33B9 MMCHR11_CTG3 SC fin 2,000 0 100
CR405681.3 WI1-95G4 MMCHR11_CTG3 SC fin 320 0 100 alignment length < 2000
FP929013.1 PCR_C57BL6J_CHR11_GAP5_1 MMCHR11_CTG3 SC fin 351 0 100 alignment length < 2000
BX664717.4 RP24-294B14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645601.13 RP23-393B19 MMCHR11_CTG3 SC fin 2,000 0 100
AL596180.8 RP23-243J8 MMCHR11_CTG3 SC fin 2,000 0 99.900
AL929426.8 RP23-471H23 MMCHR11_CTG3 SC fin 2,000 0 100
AL646096.8 RP23-176J13 MMCHR11_CTG3 SC fin 2,000 0 100
AL929418.14 RP23-268M1 MMCHR11_CTG3 SC fin 2,000 0 100
AL672175.7 RP23-205A9 MMCHR11_CTG3 SC fin 2,000 0 100
AL772375.5 RP23-112H4 MMCHR11_CTG3 SC fin 2,000 0 100
AL662930.29 RP23-212B18 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046863.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662930.29 wgs 15,988 0 99.994 contained sequence
AL672280.10 RP24-94M15 MMCHR11_CTG3 SC fin 2,000 0 100
AL645903.8 RP23-179M4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645695.18 RP23-453H19 MMCHR11_CTG3 SC fin 2,000 0 100
AL645932.8 RP23-133I19 MMCHR11_CTG3 SC fin 2,000 0 100
AL645990.14 RP23-403C12 MMCHR11_CTG3 SC fin 2,000 0 100
AL626785.26 RP23-220F20 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046797.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL626785.26 wgs 23,209 2 99.996
AL691494.15 RP23-294J14 MMCHR11_CTG3 SC fin 2,000 0 100
AL646046.8 RP23-101M12 MMCHR11_CTG3 SC fin 2,000 0 100
AL672199.16 RP23-171O21 MMCHR11_CTG3 SC fin 2,000 0 100
BX511106.5 RP24-82J19 MMCHR11_CTG3 SC fin 2,000 0 100
AL691476.12 RP23-219D8 MMCHR11_CTG3 SC fin 2,000 0 100
BX323044.4 RP23-136E1 MMCHR11_CTG3 SC fin 2,000 0 100
AL669941.12 RP23-288B4 MMCHR11_CTG3 SC fin 2,000 0 100
BX004875.4 RP23-360D16 MMCHR11_CTG3 SC fin 2,000 0 100
AL732631.4 RP23-345P19 MMCHR11_CTG3 SC fin 2,000 0 99.950
AL662779.10 RP23-177A4 MMCHR11_CTG3 SC fin 2,000 0 100
BX323005.6 RP23-125G4 MMCHR11_CTG3 SC fin 2,000 0 100
BX005114.6 RP24-199F23 MMCHR11_CTG3 SC fin 2,000 0 100
AL669907.6 RP23-245A5 MMCHR11_CTG3 SC fin 2,000 0 100
AL662785.5 RP23-186N7 MMCHR11_CTG3 SC fin 2,000 0 100
AL672173.9 RP23-149O19 MMCHR11_CTG3 SC fin 2,000 0 100
AL691507.17 RP23-215F20 MMCHR11_CTG3 SC fin 2,000 0 100
AL669915.8 RP23-13B21 MMCHR11_CTG3 SC fin 2,000 0 100
AL731668.6 RP23-430C13 MMCHR11_CTG3 SC fin 2,000 0 100
AL731896.10 RP23-348D11 MMCHR11_CTG3 SC fin 2,000 0 100
AL772164.8 RP23-400H4 MMCHR11_CTG3 SC fin 800 0 100 alignment length < 2000
AL713960.17 RP23-448I9 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046610.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL713960.17 wgs 44,953 3 99.996 contained sequence
AL683819.19 RP23-126J10 MMCHR11_CTG3 SC fin 2,000 0 100
AL805922.3 RP23-173J16 MMCHR11_CTG3 SC fin 2,000 0 100
AL731849.5 RP23-208A2 MMCHR11_CTG3 SC fin 2,000 0 100
AL731728.10 RP24-531N10 MMCHR11_CTG3 SC fin 2,000 0 100
AL954830.7 RP23-12A10 MMCHR11_CTG3 SC fin 2,000 0 100
AL845475.12 RP23-403E20 MMCHR11_CTG3 SC fin 2,000 0 100
AL663078.8 RP23-440P13 MMCHR11_CTG3 SC fin 2,000 0 100
AL662838.12 RP23-378I13 MMCHR11_CTG3 SC fin 2,000 0 100
AL645846.12 RP23-244C22 MMCHR11_CTG3 SC fin 2,000 0 100
AL645965.8 RP23-65I14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645809.8 RP23-402D13 MMCHR11_CTG3 SC fin 2,000 0 100
AL645764.15 RP23-290B5 MMCHR11_CTG3 SC fin 2,000 0 100
AL683802.5 RP23-247G3 MMCHR11_CTG3 SC fin 2,000 0 100
AL662790.21 RP23-53E2 MMCHR11_CTG3 SC fin 2,000 0 100
AL606480.11 RP23-112C19 MMCHR11_CTG3 SC fin 2,000 0 100
AL645850.6 RP23-13I22 MMCHR11_CTG3 SC fin 2,000 0 100
AL627222.10 RP23-265A5 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046453.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL627222.10 wgs 2,806 0 99.964 contained sequence
AL714014.4 RP23-344F12 MMCHR11_CTG3 SC fin 2,000 0 100
AL662875.14 RP23-67E18 MMCHR11_CTG3 SC fin 2,000 0 100
AL732490.10 RP23-17C2 MMCHR11_CTG3 SC fin 2,000 0 100
AL593858.20 RP23-151M22 MMCHR11_CTG3 SC fin 2,000 0 100
AL606704.20 RP23-375B1 MMCHR11_CTG3 SC fin 2,000 0 100
AL603682.36 RP23-235J5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645478.15 RP23-85A17 MMCHR11_CTG3 SC fin 2,000 0 100
AL606824.13 RP23-9G13 MMCHR11_CTG3 SC fin 2,000 0 100
AL596062.13 RP23-284O21 MMCHR11_CTG3 SC fin 2,000 0 100
AL607127.12 RP23-196B19 MMCHR11_CTG3 SC fin 2,000 0 100
AL596384.17 RP23-353J21 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046333.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL596384.17 wgs 54,224 3 99.998 >0 gap of 50bp or more, not simple sequence
AL606664.17 RP23-428N4 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02046312.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL606664.17 wgs 13,198 1 99.992 contained sequence
BX255873.1 RP23-237M14 MMCHR11_CTG3 SC fin 2,000 0 100
AL627445.21 RP23-81D2 MMCHR11_CTG3 SC fin 2,000 0 100
AL731681.7 RP23-60E12 MMCHR11_CTG3 SC fin 2,000 0 100
AL596088.14 RP23-157O10 MMCHR11_CTG3 SC fin 2,000 0 100
AL596123.32 RP23-94N18 MMCHR11_CTG3 SC fin 2,000 0 100
AL596446.11 RP23-386E10 MMCHR11_CTG3 SC fin 2,000 0 100
AL683806.14 RP23-47K11 MMCHR11_CTG3 SC fin 2,000 0 100
AL591209.17 RP23-309H19 MMCHR11_CTG3 SC fin 2,000 0 100
AL591205.13 RP23-333M1 MMCHR11_CTG3 SC fin 2,000 0 100
AL731720.7 RP23-132E9 MMCHR11_CTG3 SC fin 2,000 0 100
AL591390.8 RP23-355L10 MMCHR11_CTG3 SC fin 2,000 0 100
AL591125.20 RP23-438D7 MMCHR11_CTG3 SC fin 2,000 0 100
AL590963.11 RP23-395E10 MMCHR11_CTG3 SC fin 2,000 0 100
AL591067.35 RP23-333D2 MMCHR11_CTG3 SC fin 1,221 0 100 alignment length < 2000
AL591366.15 RP23-80N1 MMCHR11_CTG3 SC fin 2,000 0 100
AL590991.14 RP23-255N16 MMCHR11_CTG3 SC fin 2,000 0 100
AL591165.17 RP23-336D20 MMCHR11_CTG3 SC fin 2,000 0 100
AL591417.9 RP23-272C1 MMCHR11_CTG3 SC fin 2,000 0 100
AL590997.13 RP23-132J20 MMCHR11_CTG3 SC fin 2,000 0 100
AL590992.12 RP23-212C14 MMCHR11_CTG3 SC fin 1,295 0 100 alignment length < 2000
AL592545.10 RP23-374H24 MMCHR11_CTG3 SC fin 2,000 0 100
AL662808.12 RP23-15O20 MMCHR11_CTG3 SC fin 2,000 0 100
AL590873.17 RP23-217I3 MMCHR11_CTG3 SC fin 300 0 100 alignment length < 2000
AL590968.8 RP23-392I3 MMCHR11_CTG3 SC fin 2,000 0 100
BX842667.2 RP24-319D9 MMCHR11_CTG3 SC fin 2,000 0 100
AL591469.9 RP23-390D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL591466.8 RP23-279L23 MMCHR11_CTG3 SC fin 2,000 0 100
AL591425.4 RP23-278K23 MMCHR11_CTG3 SC fin 2,000 0 100
BX255926.10 RP23-440M18 MMCHR11_CTG3 SC fin 2,000 0 100
   FQ790374.1 PCR_C57BL6J_BX255926_1 MMCHR11_CTG3 CONTAINED in BX255926.10 unk 305 0 99.672 alignment length < 2000
AL590969.12 RP23-281C18 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
AL732315.7 RP23-124N11 MMCHR11_CTG3 SC fin 2,000 0 100
AL590996.12 RP23-328K2 MMCHR11_CTG3 SC fin 2,000 0 99.950
AL590994.13 RP23-382C19 MMCHR11_CTG3 SC fin 2,000 0 100
AL591436.8 RP23-434F13 MMCHR11_CTG3 SC fin 2,000 0 100
AL929316.2 RP23-252B10 MMCHR11_CTG3 SC fin 2,000 0 100
AL591145.25 RP23-398F7 MMCHR11_CTG3 SC fin 2,000 0 100
   FQ790373.1 PCR_C57BL6J_AL591145_1 MMCHR11_CTG3 CONTAINED in AL591145.25 unk 436 0 99.771 alignment length < 2000
BX323852.5 RP23-167N11 MMCHR11_CTG3 SC fin 2,000 0 100
AL954730.15 RP23-461C4 MMCHR11_CTG3 SC fin 2,000 0 100
AL596258.15 RP23-226P4 MMCHR11_CTG3 SC fin 1,998 1 99.950 alignment length < 2000
AL672269.15 RP23-57F11 MMCHR11_CTG3 SC fin 2,000 0 100
AL929067.8 RP24-69A20 MMCHR11_CTG3 SC fin 2,000 0 100
AL731670.13 RP23-463E7 MMCHR11_CTG3 SC fin 2,000 0 100
AL731805.8 RP23-358E19 MMCHR11_CTG3 SC fin 2,000 0 100
AL662804.18 RP23-341C5 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045812.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL662804.18 wgs 36,115 6 99.994
AL772325.4 RP23-17O4 MMCHR11_CTG3 SC fin 2,000 0 100
AL929552.10 RP23-207J12 MMCHR11_CTG3 SC fin 2,000 0 100
AL732606.5 RP23-271B17 MMCHR11_CTG3 SC fin 2,000 0 100
AL627252.16 RP23-272P17 MMCHR11_CTG3 SC fin 2,000 0 100
AL596108.13 RP23-326K2 MMCHR11_CTG3 SC fin 2,000 0 100
AL603829.5 RP23-416G21 MMCHR11_CTG3 SC fin 2,000 0 100
AL596383.8 RP23-344E9 MMCHR11_CTG3 SC fin 2,000 0 100
AL593843.9 RP23-136D4 MMCHR11_CTG3 SC fin 2,000 0 100
AL603709.14 RP23-380H19 MMCHR11_CTG3 SC fin 2,000 0 100
BX000996.4 RP24-460H24 MMCHR11_CTG3 SC fin 2,000 0 100
AL645600.11 RP23-396N4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645725.17 RP23-64B4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645976.9 RP23-442C5 MMCHR11_CTG3 SC fin 2,000 0 100
AL627235.12 RP23-324C12 MMCHR11_CTG3 SC fin 2,000 0 100
AL645471.8 RP23-456M3 MMCHR11_CTG3 SC fin 2,000 0 100
AL645572.8 RP23-386P21 MMCHR11_CTG3 SC fin 2,000 0 100
AL645684.16 RP23-35E7 MMCHR11_CTG3 SC fin 2,000 0 100
AL627312.12 RP23-276H1 MMCHR11_CTG3 SC fin 2,000 0 100
AL645524.8 RP23-35D7 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045635.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645524.8 wgs 6,931 0 99.957 contained sequence
AL596246.10 RP23-186E14 MMCHR11_CTG3 SC fin 2,000 0 100
AL731865.9 RP23-100A9 MMCHR11_CTG3 SC fin 2,000 0 100
AL596331.15 RP23-81G14 MMCHR11_CTG3 SC fin 2,000 0 100
AL604045.7 RP23-418O11 MMCHR11_CTG3 SC fin 2,000 0 100
AL663053.12 RP23-436M12 MMCHR11_CTG3 SC fin 2,000 0 100
AL672203.10 RP23-216M24 MMCHR11_CTG3 SC fin 2,000 0 100
AL603664.16 RP23-247J12 MMCHR11_CTG3 SC fin 2,000 0 100
AL593847.36 RP23-170A23 MMCHR11_CTG3 SC fin 2,000 0 100
AL596116.14 RP23-317F9 MMCHR11_CTG3 SC fin 2,000 0 100
AL645905.11 RP23-19M18 MMCHR11_CTG3 SC fin 2,000 0 100
AL645687.13 RP23-478H15 MMCHR11_CTG3 SC fin 2,000 0 100
AL683815.13 RP23-319N7 MMCHR11_CTG3 SC fin 2,000 0 100
AL645947.9 RP23-338K8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645853.12 RP23-329L1 MMCHR11_CTG3 SC fin 2,000 0 100
AL645535.16 RP23-145G23 MMCHR11_CTG3 SC fin 2,000 0 100
AL645963.9 RP23-76C16 MMCHR11_CTG3 SC fin 2,000 0 100
AL607041.18 RP23-434K11 MMCHR11_CTG3 SC fin 2,000 0 100
AL935172.8 RP23-261J24 MMCHR11_CTG3 SC fin 2,000 0 100
BX511139.4 RP24-262M23 MMCHR11_CTG3 SC fin 2,000 0 100
AL645974.7 RP23-249M13 MMCHR11_CTG3 SC fin 2,000 0 100
AL662893.12 RP23-202G21 MMCHR11_CTG3 SC fin 2,000 0 100
AL732612.28 RP23-31L20 MMCHR11_CTG3 SC fin 2,000 0 100
AL604043.11 RP23-391H8 MMCHR11_CTG3 SC fin 2,000 0 100
AL645583.12 RP23-12N20 MMCHR11_CTG3 SC fin 2,000 0 100
AL645791.14 RP23-465A12 MMCHR11_CTG3 SC fin 2,000 0 100
AL732387.10 RP23-80J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL691448.24 RP23-103A1 MMCHR11_CTG3 SC fin 2,000 0 100
BX000983.15 RP24-260C8 MMCHR11_CTG3 SC fin 2,000 0 100
AL807245.17 RP23-102B2 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045311.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL807245.17 wgs 6,402 4 99.953 >0 gap of 25bp or more, not simple sequence
AL662821.9 RP23-445H21 MMCHR11_CTG3 SC fin 2,000 0 100
AL603792.12 RP23-328B4 MMCHR11_CTG3 SC fin 2,000 0 100
AL671964.7 RP23-198N23 MMCHR11_CTG3 SC fin 2,000 0 100
AL691461.22 RP23-162E10 MMCHR11_CTG3 SC fin 2,000 0 100
AL603826.18 RP23-206P11 MMCHR11_CTG3 SC fin 2,000 0 100
AL606509.6 RP23-415B9 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045243.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL606509.6 wgs 42,916 9 99.965 contained sequence
AL691502.6 RP23-183L7 MMCHR11_CTG3 SC fin 2,000 0 100
AL592422.11 RP23-218O16 MMCHR11_CTG3 SC fin 2,000 0 100
AL662912.14 RP23-408D5 MMCHR11_CTG3 SC fin 2,000 0 100
AL928601.6 RP23-88B5 MMCHR11_CTG3 SC fin 2,000 0 100
AL645928.9 RP23-185J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL596456.15 RP23-353K20 MMCHR11_CTG3 SC fin 2,000 0 100
BX284626.3 RP23-76P19 MMCHR11_CTG3 SC fin 2,000 0 100
AL844564.14 RP23-400D4 MMCHR11_CTG3 SC fin 2,000 0 100
AL929398.4 RP24-315P22 MMCHR11_CTG3 SC fin 2,000 0 100
AL844491.14 RP23-173A8 MMCHR11_CTG3 SC fin 2,000 0 100
BX284643.8 RP23-366J22 MMCHR11_CTG3 SC fin 2,000 0 100
AL772402.5 RP23-65J9 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045127.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL772402.5 wgs 28,572 7 99.986 contained sequence
BX678775.3 RP24-82E8 MMCHR11_CTG3 SC fin 2,000 1 100 simple sequence in gap
BX664619.13 RP23-349B9 MMCHR11_CTG3 SC fin 2,000 0 100
AL683879.19 RP23-36D5 MMCHR11_CTG3 SC fin 2,000 0 100
BX294099.5 RP23-345E9 MMCHR11_CTG3 SC fin 2,000 0 100
AL604023.12 RP23-468D17 MMCHR11_CTG3 SC fin 2,000 0 100
AL596104.24 RP23-326P8 MMCHR11_CTG3 SC fin 2,000 0 100
AL596212.11 RP23-176I6 MMCHR11_CTG3 SC fin 2,000 0 100
AL604025.15 RP23-455K6 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02045054.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL604025.15 wgs 30,180 1 99.997 contained sequence
AL603705.16 RP23-428E17 MMCHR11_CTG3 SC fin 2,000 0 100
AL603706.13 RP23-407I21 MMCHR11_CTG3 SC fin 2,000 0 100
AL663117.14 RP23-217A20 MMCHR11_CTG3 SC fin 2,000 0 100
AL672202.9 RP23-147L19 MMCHR11_CTG3 SC fin 2,000 0 100
AL627323.6 RP23-477G24 MMCHR11_CTG3 SC fin 1,999 1 100 alignment length < 2000
AL645805.5 RP23-175A18 MMCHR11_CTG3 SC fin 2,000 0 100
AL606498.17 RP23-197C15 MMCHR11_CTG3 SC fin 2,000 0 100
AL645530.11 RP23-92N10 MMCHR11_CTG3 SC fin 2,000 0 100
AL645484.14 RP23-38A10 MMCHR11_CTG3 SC fin 2,000 0 100
AL663079.9 RP23-273C14 MMCHR11_CTG3 SC fin 2,000 0 100
AL669969.14 RP23-254J18 MMCHR11_CTG3 SC fin 2,000 0 100
AL607025.21 RP23-331L12 MMCHR11_CTG3 SC fin 2,000 0 100
AL606487.15 RP23-342L24 MMCHR11_CTG3 SC fin 2,000 0 100
AL603828.9 RP23-117K15 MMCHR11_CTG3 SC fin 2,000 0 100
AL627096.9 RP23-380B14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645470.20 RP23-392H19 MMCHR11_CTG3 SC fin 2,000 0 100
AL732491.11 RP23-28I4 MMCHR11_CTG3 SC fin 2,000 0 100
AL645852.23 RP23-354K2 MMCHR11_CTG3 SC fin 2,000 0 100
AL645647.8 RP23-332L17 MMCHR11_CTG3 SC fin 2,000 0 100
AL607108.17 RP23-42F6 MMCHR11_CTG3 SC fin 2,000 0 100
AL669925.8 RP23-174D24 MMCHR11_CTG3 SC fin 2,000 0 100
AL645861.12 RP23-184G6 MMCHR11_CTG3 SC fin 2,000 0 100
AL645851.8 RP23-193A16 MMCHR11_CTG3 SC fin 2,000 0 100
AL607039.25 RP23-313J14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645542.13 RP23-468A19 MMCHR11_CTG3 SC fin 2,000 0 100
AL663089.9 RP23-393L8 MMCHR11_CTG3 SC fin 2,000 0 100
AL627205.12 RP23-41E14 MMCHR11_CTG3 SC fin 2,000 0 100
AL645975.9 RP23-154F12 MMCHR11_CTG3 SC fin 2,000 0 100
AL611935.6 RP23-284L12 MMCHR11_CTG3 SC fin 2,000 0 100
AL603868.15 RP23-101J23 MMCHR11_CTG3 SC fin 2,000 0 100
BX548165.11 RP24-89M13 MMCHR11_CTG3 SC fin 2,000 0 100
BX842660.2 RP23-54L24 MMCHR11_CTG3 SC fin 2,000 0 100
AL672228.14 RP24-133C15 MMCHR11_CTG3 SC fin 2,000 0 100
AL645856.5 RP23-151N19 MMCHR11_CTG3 SC fin 2,000 0 100
   AEKQ02044698.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL645856.5 wgs 79,369 6 99.999
AL591433.6 RP23-268N22 MMCHR11_CTG3 SC fin 2,000 0 100
AL591204.14 RP23-28C17 MMCHR11_CTG3 SC fin 2,000 0 100
AL591109.8 RP23-399F7 MMCHR11_CTG3 SC fin 2,000 0 100
AL591404.4 RP23-394O9 MMCHR11_CTG3 SC fin 2,000 0 100
AL591075.11 RP23-159O6 MMCHR11_CTG3 SC fin 2,000 0 100
AL591514.7 RP23-266L14 MMCHR11_CTG3 SC fin 2,000 0 100
   LXEJ02004893.1 ? MMCHR11_CTG3 CONTAINED_SUBSEQ in AL591514.7 wgs 229,847 18 100.000 contained sequence
AL591544.30 RP23-386D6 MMCHR11_CTG3 SC fin 2,000 0 100
AL662835.11 RP23-458A23 MMCHR11_CTG3 SC fin 2,000 0 100
AL672140.7 RP23-13O17 MMCHR11_CTG3 SC fin 2,000 0 100
AL645911.14 RP23-25M3 MMCHR11_CTG3 SC fin 2,000 0 100
AL669881.19 RP23-161I3 MMCHR11_CTG3 SC fin 2,000 0 100
AL928989.9 RP24-125C11 MMCHR11_CTG3 SC fin 2,000 0 100
BX248132.4 RP23-209A19 MMCHR11_CTG3 SC fin 2,000 0 100
AL929234.9 RP24-225K18 MMCHR11_CTG3 SC fin 2,000 0 100
AL953913.5 RP23-390H16 MMCHR11_CTG3 SC fin 2,000 0 100
AL844194.6 RP23-132K5 MMCHR11_CTG3 SC fin 2,000 0 100
AL807824.10 RP23-37J21 MMCHR11_CTG3 SC fin 2,000 0 100
AL928567.6 RP23-296K20 MMCHR11_CTG3 SC fin 2,000 0 100
AL669855.20 RP23-82I5 MMCHR11_CTG3 SC fin 2,000 0 100
AL663030.12 RP23-84C12 MMCHR11_CTG3 SC fin 2,000 0 100
AL663090.15 RP23-99M13 MMCHR11_CTG3 SC fin 2,000 0 100
AL662901.18 RP23-378G22 MMCHR11_CTG3 SC fin 2,000 0 100
AL662887.13 RP23-400P17 MMCHR11_CTG3 SC fin 2,000 0 100
AL808021.12 RP23-349B15 MMCHR11_CTG3 SC fin 2,000 0 100
AL663088.10 RP23-293H17 MMCHR11_CTG3 SC fin 2,000 0 100
AL731662.9 RP23-414M3 MMCHR11_CTG3 SC fin 100 0 100 alignment length < 2000
AL645972.10 RP23-274J5 MMCHR11_CTG3 SC fin 2,000 0 100
AL663041.6 RP23-342H16 MMCHR11_CTG3 SC fin 2,000 0 100
BX000432.7 RP23-156G21 MMCHR11_CTG3 SC fin 2,000 0 100
CR556721.3 CH25-254D12 MMCHR11_CTG3 SC fin
GAP TELOMERE 100000