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TPF view for rat chromosome 18

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TPF revision information

Last updated:
October 11, 2022 at 11:27 AM Eastern Time
By:
MCW(wdemos)
Version:
2

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Serious alignment problem, requires review
  • Minor alignment problem
  • Excellent alignment, meets all defined criteria
  • Certificate submitted, not yet approved
  • Certificate submitted and approved
  • Valid, contained clone
  • Join not evaluated due to one accession not being finished
Current TPF view for rat chromosome 18 (v. 2)
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
JACYVU010000298.1 ? RN_CHR18_SCAF_1
   GAP TYPE-2 8000 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000299.1 ? RN_CHR18_SCAF_1
   GAP TYPE-2 200 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000300.1 ? RN_CHR18_SCAF_1
   GAP TYPE-2 29 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000301.1 ? RN_CHR18_SCAF_1 None wgs
   JACYVV010002134.1 ? RN_CHR18_SCAF_1 CONTAINED_SUBSEQ in JACYVU010000301.1 wgs 101,982 160 99.978 contained sequence
   GAP TYPE-2 200 OPTICAL MAP;PROXIMITY LIGATION
JACYVU010000302.1 ? RN_CHR18_SCAF_1