CIITA class II major histocompatibility complex transactivator
Gene ID: 4261, updated on 2-Nov-2024Gene type: protein coding
Also known as: C2TA; NLRA; MHC2D1; MHC2TA; CIITAIV
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- Go to complete Gene record for CIITA
- Go to Variation Viewer for CIITA variants
Summary
This gene encodes a protein with an acidic transcriptional activation domain, 4 LRRs (leucine-rich repeats) and a GTP binding domain. The protein is located in the nucleus and acts as a positive regulator of class II major histocompatibility complex gene transcription, and is referred to as the "master control factor" for the expression of these genes. The protein also binds GTP and uses GTP binding to facilitate its own transport into the nucleus. Once in the nucleus it does not bind DNA but rather uses an intrinsic acetyltransferase (AT) activity to act in a coactivator-like fashion. Mutations in this gene have been associated with bare lymphocyte syndrome type II (also known as hereditary MHC class II deficiency or HLA class II-deficient combined immunodeficiency), increased susceptibility to rheumatoid arthritis, multiple sclerosis, and possibly myocardial infarction. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2013]
Associated conditions
See all available tests in GTR for this gene
Description | Tests |
---|---|
Genome-wide association identifies multiple ulcerative colitis susceptibility loci. GeneReviews: Not available | |
MHC class II deficiency MedGen: C2931418GeneReviews: Not available | See labs |
Multiple common variants for celiac disease influencing immune gene expression. GeneReviews: Not available | |
Rheumatoid arthritis | See labs |
Genomic context
- Location:
- 16p13.13
- Sequence:
- Chromosome: 16; NC_000016.10 (10866206..10943021)
- Total number of exons:
- 26
Variation
Resource | Links for this gene |
---|---|
ClinVar | Variants reported to ClinVar |
dbVar | Studies and variants |
SNP | Variation Viewer for CIITA variants |
Genome viewer | Explore NCBI-annotated and select non-NCBI annotated genome assemblies |
- CIITA database
- CIITAbase: Mutation registry for MHCII transactivating protein deficiency (previously known as MHC2TAbase)
- ClinVarRelated medical variations
- dbVarLink from Gene to dbVar
- MedGenRelated information in MedGen
- OMIMLink to related OMIM entry
- PubMed (OMIM)Gene links to PubMed derived from omim_pubmed_cited links
- RefSeq RNAsLink to Nucleotide RefSeq RNAs
- RefSeqGeneLink to Nucleotide RefSeqGenes
- Variation ViewerRelated Variants
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