GTR Test Accession:
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GTR000593384.2
CAP
Last updated in GTR: 2024-07-25
View version history
GTR000593384.2, last updated: 2024-07-25
GTR000593384.1, last updated: 2021-06-23
Last annual review date for the lab: 2024-08-07
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At a Glance
Test purpose:
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Screening
Conditions (3):
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Down syndrome;
Complete trisomy 13 syndrome;
Complete trisomy 18
Chr13, Chr18 and Chr21
Methods (1):
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Molecular Genetics - Deletion/duplication analysis: Next-Generation (NGS)/Massively parallel sequencing (MPS)
Target population: Help
Pregnant women 10week of gestation or more with high-risk of …
Clinical validity:
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Maternal plasma cell-free DNA is a highly effective form of …
Clinical utility:
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Avoidance of invasive testing
Ordering Information
Offered by:
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Laboratoire de Diagnostic Moleculaire
View lab's test page
View lab's test page
Test short name:
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NIPT / TGPNI
Specimen Source:
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- Peripheral (whole) blood
- Plasma
- View specimen requirements
Who can order: Help
- Licensed Physician
Test Order Code:
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TGPNI
Lab contact:
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Contact Policy:
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Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
How to Order:
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Standard form to be completed for women eligible to the public (free) NIPT test.
Order URL
Order URL
Test service:
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Clinical Testing/Confirmation of Mutations Identified Previously
Test development:
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Test developed by laboratory but exempt from FDA oversight (eg. NYS CLEP approved, offered within a hospital or clinic)
Informed consent required:
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Yes
Test strategy:
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Massively parallel genomic sequencing of cell-free DNA fragments in maternal blood.
View citations (1)
- Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Pre-test genetic counseling required:
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Decline to answer
Post-test genetic counseling required:
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Decline to answer
Conditions
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Total conditions: 3
Condition/Phenotype | Identifier |
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Test Targets
Chromosomal regions/Mitochondria
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Total chromosomal regions/mitochondria: 1
Chromosomal region/Mitochondrion | Associated condition |
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Methodology
Total methods: 1
Method Category
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Test method
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Instrument
Deletion/duplication analysis
Next-Generation (NGS)/Massively parallel sequencing (MPS)
Illumina NextSeq550
Clinical Information
Test purpose:
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Screening
Clinical validity:
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Maternal plasma cell-free DNA is a highly effective form of early prenatal screening of common trisomies (21, 18, 13) after 10 weeks’ gestation (II-2A). Currently, offering maternal plasma cell-free DNA to all women as a primary screening method is not fiscally feasible in most provinces. Offering cell-free DNA in a …
View more
View citations (2)
- https://www.jogc.com/article/S1701-2163(17)30070-1/abstract
- https://www.jogc.com/article/S1701-2163(17)30070-1/abstract
Clinical utility:
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Avoidance of invasive testing
View citations (1)
- No. 348-Joint SOGC-CCMG Guideline: Update on Prenatal Screening for Fetal Aneuploidy, Fetal Anomalies, and Adverse Pregnancy Outcomes. Audibert F, et al. J Obstet Gynaecol Can. 2017;39(9):805-817. doi:10.1016/j.jogc.2017.01.032. PMID: 28859766.
Target population:
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Pregnant women 10week of gestation or more with high-risk of fetal anueploidy. Participating in the Quebec Prenatal Screening Program (public).
View citations (1)
- https://publications.msss.gouv.qc.ca/msss/en/document-002819/
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS?
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not applicable
not applicable
Are family members with defined clinical status recruited to assess significance of VUS without charge?
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No.
No.
Will the lab re-contact the ordering physician if variant interpretation changes?
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Not provided. not applicable
Not provided. not applicable
Research:
Is research allowed on the sample after clinical testing is complete?
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no
no
Recommended fields not provided:
Will the lab re-contact the ordering physician if variant interpretation changes?,
Sample negative report,
Sample positive report
Technical Information
Test Procedure:
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MPSS read counts and chromosomal ratios.
View citations (1)
- Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Test Platform:
None/not applicable
Test Confirmation:
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Clinical follow up with genetic counselling and volountary definitive diagnosis
Availability:
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Tests performed
Entire test performed in-house
Entire test performed in-house
Analytical Validity:
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Sensitivity ≥ 99% for T13, T18 and T21
Specificity ≥ 99.8% for T13, T18 and T21
Accuracy ≥ 99.3% for T13, T18 and T21
Based on 1933 high risk pregnant women samples (212 aneuploid pregnancies confirmed by caryotype or equivalent)
View citations (1)
- Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Assay limitations:
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Women who are considering undergoing maternal plasma cell-free DNA (cfDNA) screening should be informed that: • It is a highly effective screening test for the common fetal trisomies (21, 18, 13), performed after 10 weeks’ gestation (II-1A). • There is a possibility of a failed test (no result available), false …
View more
View citations (1)
- DOI:https://doi.org/10.1016/j.jogc.2017.01.032
Proficiency testing (PT):
Is proficiency testing performed for this test?
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No
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
College of American Pathologists, CAP
Description of PT method: Help
Regular analysis of plasma samples from pregnant women with return of results to CAP and independent performance analysis.
Description of internal test validation method: Help
Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA
CAP Testing Information Help
Noninvasive Prenatal Testing; Cell-free DNA; CFDNA
No
Method used for proficiency testing: Help
Formal PT program
PT Provider: Help
College of American Pathologists, CAP
Description of PT method: Help
Regular analysis of plasma samples from pregnant women with return of results to CAP and independent performance analysis.
Description of internal test validation method: Help
Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA
CAP Testing Information Help
Noninvasive Prenatal Testing; Cell-free DNA; CFDNA
VUS:
Software used to interpret novel variations
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not applicable
Laboratory's policy on reporting novel variations Help
not applicable
not applicable
Laboratory's policy on reporting novel variations Help
not applicable
Regulatory Approval
FDA Review:
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Category:
FDA exercises enforcement discretion
Additional Information
Reviews:
Clinical resources:
Molecular resources:
Practice guidelines:
Consumer resources:
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with specific questions about a genetic test should contact a health care provider or a genetics professional.