Prenatal ccfDNA screening for fetal aneuploidy
GTR Test Accession: Help GTR000593384.1
CAP
INHERITED DISEASESYNDROMIC DISEASEOPHTHALMOLOGY ... View more
Last updated in GTR: 2021-06-23
Last annual review date for the lab: 2021-06-23 Past due LinkOut
At a Glance
Screening
Complete trisomy 13 syndrome; Complete trisomy 21 syndrome; Trisomy 18
Chr13, Chr18 and Chr21
Molecular Genetics - Deletion/duplication analysis: Next-Generation (NGS)/Massively parallel sequencing (MPS)
Pregnant women 10week of gestation or more with high-risk of …
Maternal plasma cell-free DNA is a highly effective form of …
Avoidance of invasive testing
Ordering Information
Offered by: Help
Laboratoire de Diagnostic Moleculaire
View lab's test page
Test short name: Help
NIPT / TGPNI
Specimen Source: Help
Who can order: Help
  • Licensed Physician
Test Order Code: Help
TGPNI
Lab contact: Help
Contact Policy: Help
Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
How to Order: Help
Standard form to be completed for women eligible to the public (free) NIPT test.
Order URL
Test service: Help
Clinical Testing/Confirmation of Mutations Identified Previously
Test development: Help
Test developed by laboratory (no manufacturer test name)
Informed consent required: Help
Yes
Test strategy: Help
Massively parallel genomic sequencing of cell-free DNA fragments in maternal blood.
View citations (1)
  • Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Pre-test genetic counseling required: Help
Decline to answer
Post-test genetic counseling required: Help
Decline to answer
Conditions Help
Total conditions: 3
Condition/Phenotype Identifier
Test Targets
Chromosomal regions/Mitochondria Help
Total chromosomal regions/mitochondria: 1
Chromosomal region/Mitochondrion Associated condition
Methodology
Total methods: 1
Method Category Help
Test method Help
Instrument
Deletion/duplication analysis
Next-Generation (NGS)/Massively parallel sequencing (MPS)
Illumina NextSeq500
Clinical Information
Test purpose: Help
Screening
Clinical validity: Help
Maternal plasma cell-free DNA is a highly effective form of early prenatal screening of common trisomies (21, 18, 13) after 10 weeks’ gestation (II-2A). Currently, offering maternal plasma cell-free DNA to all women as a primary screening method is not fiscally feasible in most provinces. Offering cell-free DNA in a … View more
View citations (2)
Clinical utility: Help
Avoidance of invasive testing
View citations (1)
  • No. 348-Joint SOGC-CCMG Guideline: Update on Prenatal Screening for Fetal Aneuploidy, Fetal Anomalies, and Adverse Pregnancy Outcomes. Audibert F, et al. J Obstet Gynaecol Can. 2017;39(9):805-817. doi:10.1016/j.jogc.2017.01.032. PMID: 28859766.

Target population: Help
Pregnant women 10week of gestation or more with high-risk of fetal anueploidy. Participating in the Quebec Prenatal Screening Program (public).
View citations (1)
  • https://publications.msss.gouv.qc.ca/msss/en/document-002819/
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS? Help
not applicable

Are family members with defined clinical status recruited to assess significance of VUS without charge? Help
No.

Will the lab re-contact the ordering physician if variant interpretation changes? Help
Not provided. not applicable
Research:
Is research allowed on the sample after clinical testing is complete? Help
no
Recommended fields not provided:
Technical Information
Test Procedure: Help
MPSS read counts and chromosomal ratios.
View citations (1)
  • Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Test Platform:
None/not applicable
Test Confirmation: Help
Clinical follow up with genetic counselling and volountary definitive diagnosis
Availability: Help
Tests performed
Entire test performed in-house
Analytical Validity: Help
Sensitivity ≥ 99% for T13, T18 and T21 Specificity ≥ 99.8% for T13, T18 and T21 Accuracy ≥ 99.3% for T13, T18 and T21 Based on 1933 high risk pregnant women samples (212 aneuploid pregnancies confirmed by caryotype or equivalent)
View citations (1)
  • Rousseau F, Langlois S, Johnson JA, Gekas J, Bujold E, Audibert F, Walker M, Giroux S, Caron A, Clément V, Blais J, MacLeod T, Moore R, Gauthier J, Jouan L, Laporte A, Diallo O, Parker J, Swanson L, Zhao Y, Labelle Y, Giguère Y, Forest JC, Little J, Karsan A, Rouleau G. Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA: the PEGASUS study. Eur J Hum Genet. 2019;27(11):1701-1715. doi:10.1038/s41431-019-0443-0. Epub 2019 Jun 23. PMID: 31231136.
Assay limitations: Help
Women who are considering undergoing maternal plasma cell-free DNA (cfDNA) screening should be informed that: • It is a highly effective screening test for the common fetal trisomies (21, 18, 13), performed after 10 weeks’ gestation (II-1A). • There is a possibility of a failed test (no result available), false … View more
View citations (1)
  • No. 348-Joint SOGC-CCMG Guideline: Update on Prenatal Screening for Fetal Aneuploidy, Fetal Anomalies, and Adverse Pregnancy Outcomes. Audibert F, et al. J Obstet Gynaecol Can. 2017;39(9):805-817. doi:10.1016/j.jogc.2017.01.032. PMID: 28859766.
Proficiency testing (PT):
Is proficiency testing performed for this test? Help
No

Method used for proficiency testing: Help
Formal PT program

PT Provider: Help
College of American Pathologists, CAP

Description of PT method: Help
Regular analysis of plasma samples from pregnant women with return of results to CAP and independent performance analysis.

Description of internal test validation method: Help
Prospective head-to-head comparison of accuracy of two sequencing platforms for screening for fetal aneuploidy by cell-free DNA
VUS:
Software used to interpret novel variations Help
not applicable

Laboratory's policy on reporting novel variations Help
not applicable
Recommended fields not provided:
Regulatory Approval
FDA Review: Help
Category: FDA exercises enforcement discretion
Additional Information

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