Hypophosphatemic rickets panel. NGS panel of 13 genes.
Clinical Genetic Test
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offered by
GTR Test Accession: Help GTR000597074.1
INHERITED DISEASEMUSCULOSKELETALMETABOLIC DISEASE ... View more
Last updated in GTR: 2021-11-30
Last annual review date for the lab: 2021-11-17 Past due LinkOut
At a Glance
Diagnosis; Mutation Confirmation
Adult hypophosphatasia; Arterial calcification, generalized, of infancy, 1; Autosomal dominant hypophosphatemic rickets more...
ALPL (1p36.12); CLCN5 (Xp11.23); CYP27B1 (12q14.1); CYP2R1 (11p15.2); DMP1 (4q22.1) more...
Molecular Genetics - Sequence analysis of the entire coding region: Next-Generation (NGS)/Massively parallel sequencing (MPS)
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Ordering Information
Offered by: Help
Test short name: Help
Hypophosphatemic rickets panel. NGS panel of 13 genes.
Specimen Source: Help
  • Amniotic fluid
  • Bone marrow
  • Buccal swab
  • Cell culture
  • Chorionic villi
  • Cord blood
  • Dried blood spot (DBS) card
  • Fetal blood
  • Fibroblasts
  • Fresh tissue
  • Frozen tissue
  • Isolated DNA
  • Peripheral (whole) blood
  • Saliva
  • Skin
  • View specimen requirements
Who can order: Help
  • Genetic Counselor
  • Health Care Provider
  • In-State Patients
  • Nurse Practitioner
  • Physician Assistant
  • Public Health Mandate
  • Registered Nurse
Test Order Code: Help
Contact Policy: Help
Laboratory can only accept contact from health care providers. Patients/families are encouraged to discuss genetic testing options with their health care provider.
Post-test email/phone consultation regarding genetic test results and interpretation is provided to patients/families.
Pre-test email/phone consultation regarding genetic test results and interpretation is provided to patients/families.
How to Order: Help
In the case of prenatal samples or samples that require special urgency, it must be indicated as such so that the procedure and response times are modified, incorporating an emergency protocol. Types of samples: - Peripheral blood> 5 ml> A 5 ‚Äã‚Äãml tube with EDTA. - Chorionic villi> 5-6 mg …
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Order URL
Test service: Help
Custom Sequence Analysis
Genetic counseling
Test development: Help
Test developed by laboratory but exempt from FDA oversight (eg. NYS CLEP approved, offered within a hospital or clinic)
Informed consent required: Help
Decline to answer
Pre-test genetic counseling required: Help
No
Post-test genetic counseling required: Help
No
Recommended fields not provided:
Conditions Help
Total conditions: 25
Condition/Phenotype Identifier
Test Targets
Genes Help
Total genes: 13
Gene Associated Condition Germline or Somatic Allele (Lab-provided) Variant in NCBI
Methodology
Total methods: 1
Method Category Help
Test method Help
Instrument *
Sequence analysis of the entire coding region
Next-Generation (NGS)/Massively parallel sequencing (MPS)
* Instrument: Not provided
Clinical Information
Test purpose: Help
Diagnosis; Mutation Confirmation
Variant Interpretation:
What is the protocol for interpreting a variation as a VUS? Help
Standards and Guidelines for the Interpretation of Sequence Variants: A Joint Consensus Recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology

Are family members with defined clinical status recruited to assess significance of VUS without charge? Help
Not provided

Will the lab re-contact the ordering physician if variant interpretation changes? Help
Yes.
Recommended fields not provided:
Technical Information
Availability: Help
Tests performed
Entire test performed in-house
Analytical Validity: Help
The test is 99% sensitive for detecting SNVs and small indels (<20bp).
Proficiency testing (PT):
Is proficiency testing performed for this test? Help
Yes

Method used for proficiency testing: Help
Inter-Laboratory

PT Provider: Help
European Molecular Genetics Quality Network, EMQN
VUS:
Software used to interpret novel variations Help
SIFT, PoliPhen, Mutation Taster, PROVEAN
Recommended fields not provided:
Regulatory Approval
FDA Review: Help
Not provided
Additional Information

IMPORTANT NOTE: NIH does not independently verify information submitted to GTR; it relies on submitters to provide information that is accurate and not misleading. NIH makes no endorsements of tests or laboratories listed in GTR. GTR is not a substitute for medical advice. Patients and consumers with specific questions about a genetic test should contact a health care provider or a genetics professional.