Genomes
NCBI's Genome resources include information on large-scale genomics projects, genome sequences and assemblies, and mapped annotations, such as variations, markers and data from epigenomics studies.
How to
Genome Sequences
- Genome
- information about organisms' genomes
- Assembly
- genomic assembly statistics
- Nucleotide
- genome sequences in the Nucleotide repository
- SRA
- high-throughput DNA sequences
- GSS
- genome survey sequences
- Genome BLAST
- sequence search tool for genome sequences
Functional Genomics
- GEO DataSets
- functional genomics study data
- GEO2R
- identifies differentially expressed genes in GEO datasets
Variation Resources
- dbSNP
- catalog of short genetic variations
- dbVar
- genome structural variation studies
- Variation Viewer
- displays variations in a genomic context
- 1000 Genomes Browser
- genome viewer for 1000 Genomes data
- Variation Reporter
- generates coordinate reports for genomic variants
Supporting Resources
- Taxonomy
- taxonomic classification and nomenclature catalog
- GenBank
- primary nucleotide sequence repository
- RefSeq
- curated, non-redundant biological sequence set
- BioProject
- catalog of high-throughput genome-wide studies
- BioSample
- sample repository for the BioProjects database
- Clone
- genomic and cDNA clone repository
- Probe
- sequence-based probe and primer repository
- GRC
- Genome Reference Consortium
Additional Tools
- Genome Data Viewer
- displays data tracks in an interactive genome browser
- Genome Decoration Page
- generates genome annotation graphics
- Genome Workbench
- displays and analyzes sequence data
- PheGenl
- aggregates GWAS study and related data
- Primer-BLAST
- designs PCR primers
- ProSplign
- aligns proteins to genomic DNA
- ReMap
- maps data between genomic assemblies
- Sequence Cytogenetic Conversion Service
- converts sequence and cytogenetic coordinates
- Splign
- aligns cDNA to genomic DNA