Entry - *603839 - NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B3; NDUFB3 - OMIM
 
* 603839

NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B3; NDUFB3


Alternative titles; symbols

NADH-UBIQUINONE OXIDOREDUCTASE 1 BETA SUBCOMPLEX, 3


HGNC Approved Gene Symbol: NDUFB3

Cytogenetic location: 2q33.1     Genomic coordinates (GRCh38): 2:201,072,001-201,085,750 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
2q33.1 Mitochondrial complex I deficiency, nuclear type 25 618246 AR 3

TEXT

Description

The multisubunit NADH:ubiquinone oxidoreductase (complex I) is the first enzyme complex in the electron transport chain of mitochondria. See NDUFA2 (602137).


Cloning and Expression

Ton et al. (1997) isolated human heart cDNAs encoding CI-B12 (NDUFB3) and 4 other complex I subunits.


Gene Structure

Jensen et al. (2001) determined that the NDUFB3 gene contains 3 exons and spans 13.9 kb of genomic DNA.


Mapping

By radiation hybrid analysis, Jensen et al. (2001) mapped the NDUFB3 gene to chromosome 2q31.3. They also mapped 4 NDUFB3 pseudogenes. One of the pseudogenes, NDUFB3P4, is positioned in intron 2 of the WARS gene (191050) in the opposite direction.


Molecular Genetics

In a patient with severe mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 603839) (patient 2 in Lamont et al., 2004), Calvo et al. (2012) identified a homozygous mutation in the NDUFB3 gene (W22R; 603839.0001). The pregnancy was complicated by intrauterine growth retardation and premature birth at 31 weeks' gestation; respiratory insufficiency required extensive artificial ventilation in the neonatal period. After discharge home, she showed hypotonia with poor feeding and significant lactic acidosis and died unexpectedly at age 4 months. Skeletal muscle biopsy showed variation in the shape and size of muscle fibers, and atrophic fibers containing nemaline rods. Biochemical analysis showed complex I deficiency with borderline low complex III deficiency, the latter of which may have been an artifact.

In a patient with MC1DN25, Haack et al. (2012) identified compound heterozygosity for 2 mutations in the NDUFB3 gene (W22R; and G70X, 603839.0002). The mutations were identified by exome sequencing. The patient had encephalopathy, myopathy, hypotonia, developmental delay, and lactic acidosis. Complex I activity in patient fibroblasts was 17% of normal and the level of assembled complex I was decreased. Expression of wildtype NDUFB3 rescued the biochemical defect. Of note, complex IV and V were also slightly decreased in patient fibroblasts to 48% and 76% of controls, respectively; these latter defects were not altered by expression of wildtype NDUFB3. The findings established NDUFB3 as a gene responsible for human complex I deficiency.


ALLELIC VARIANTS ( 2 Selected Examples):

.0001 MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 25

NDUFB3, TRP22ARG
  
RCV000239318...

In a female infant, born of unrelated parents of British and Dutch descent, with severe lethal mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 618246), Calvo et al. (2012) identified a homozygous 64T-C transition in the NDUFB3 gene, resulting in a trp22-to-arg (W22R) substitution in a highly conserved residue. The unaffected mother was a carrier; DNA from the father was not available. Fibroblasts from the patient showed 2 to 15% residual complex I protein levels and activity, depending on the method used, and expression of wildtype NDUFB3 rescued the defect.


.0002 MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 25

NDUFB3, GLY70TER
  
RCV000033057...

In a patient with mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 618246), Haack et al. (2012) identified compound heterozygosity for 2 mutations in the NDUFB3 gene: the previously described W22R mutation (603839.0001) and a 208G-T transversion, resulting in a gly70-to-ter (G70X) substitution. The mutations were identified by exome sequencing. The patient had encephalopathy, myopathy, hypotonia, developmental delay, and lactic acidosis. Complex I activity in patient fibroblasts was 17% of normal and the level of assembled complex I was decreased. Expression of wildtype NDUFB3 rescued the biochemical defect. Of note, complex IV and V were also slightly decreased in patient fibroblasts to 48% and 76% of controls, respectively; these defects were not altered by expression of wildtype NDUFB3. The findings established NDUFB3 as a gene responsible for human complex I deficiency.


REFERENCES

  1. Calvo, S. E., Compton, A. G., Hershman, S. G., Lim, S. C., Lieber, D. S., Tucker, E. J., Laskowski, A., Garone, C., Liu, S., Jaffe, D. B., Christodoulou, J., Fletcher, J. M., Bruno, D. L., Goldblatt, J., DiMauro, S., Thorburn, D. R., Mootha, V. K. Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing. Sci. Transl. Med. 4: 118ra10, 2012. Note: Electronic Article. [PubMed: 22277967, images, related citations] [Full Text]

  2. Haack, T. B., Haberberger, B., Frisch, E.-M., Wieland, T., Iuso, A., Gorza, M., Strecker, V., Graf, E., Mayr, J. A., Herberg, U., Hennermann, J. B., Klopstock, T., and 16 others. Molecular diagnosis in mitochondrial complex I deficiency using exome sequencing. J. Med. Genet. 49: 277-283, 2012. [PubMed: 22499348, related citations] [Full Text]

  3. Jensen, L. L., Nielsen, M. M., Justesen, J., Hansen, L. L. Assignment of human NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 (NDUFB3) and of its four pseudogenes to human chromosomes 2q31.3, 1p13.3-p13.1, 9q32-q34.1, 14q22.3-q23.1 and 14q32.2 by radiation hybrid mapping. Cytogenet. Cell Genet. 93: 147-150, 2001. [PubMed: 11474204, related citations] [Full Text]

  4. Lamont, P. J., Thorburn, D. R., Fabian, V., Vajsar, J., Hawkins, C., Saada Reisch, A., Durling, H., Laing, N. G., Nevo, Y. Nemaline rods and complex I deficiency in three infants with hypotonia, motor delay and failure to thrive. Neuropediatrics 35: 302-306, 2004. [PubMed: 15534765, related citations] [Full Text]

  5. Ton, C., Hwang, D. M., Dempsey, A. A., Liew, C.-C. Identification and primary structure of five human NADH-ubiquinone oxidoreductase subunits. Biochem. Biophys. Res. Commun. 241: 589-594, 1997. [PubMed: 9425316, related citations] [Full Text]


Cassandra L. Kniffin - updated : 11/29/2012
Cassandra L. Kniffin - updated : 2/1/2012
Carol A. Bocchini - updated : 8/28/2001
Creation Date:
Rebekah S. Rasooly : 5/25/1999
carol : 02/01/2021
carol : 12/13/2018
carol : 12/04/2012
ckniffin : 11/29/2012
carol : 2/3/2012
terry : 2/2/2012
ckniffin : 2/1/2012
carol : 8/28/2001
carol : 8/28/2001
alopez : 5/25/1999
alopez : 5/25/1999
alopez : 5/25/1999

* 603839

NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B3; NDUFB3


Alternative titles; symbols

NADH-UBIQUINONE OXIDOREDUCTASE 1 BETA SUBCOMPLEX, 3


HGNC Approved Gene Symbol: NDUFB3

Cytogenetic location: 2q33.1     Genomic coordinates (GRCh38): 2:201,072,001-201,085,750 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
2q33.1 Mitochondrial complex I deficiency, nuclear type 25 618246 Autosomal recessive 3

TEXT

Description

The multisubunit NADH:ubiquinone oxidoreductase (complex I) is the first enzyme complex in the electron transport chain of mitochondria. See NDUFA2 (602137).


Cloning and Expression

Ton et al. (1997) isolated human heart cDNAs encoding CI-B12 (NDUFB3) and 4 other complex I subunits.


Gene Structure

Jensen et al. (2001) determined that the NDUFB3 gene contains 3 exons and spans 13.9 kb of genomic DNA.


Mapping

By radiation hybrid analysis, Jensen et al. (2001) mapped the NDUFB3 gene to chromosome 2q31.3. They also mapped 4 NDUFB3 pseudogenes. One of the pseudogenes, NDUFB3P4, is positioned in intron 2 of the WARS gene (191050) in the opposite direction.


Molecular Genetics

In a patient with severe mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 603839) (patient 2 in Lamont et al., 2004), Calvo et al. (2012) identified a homozygous mutation in the NDUFB3 gene (W22R; 603839.0001). The pregnancy was complicated by intrauterine growth retardation and premature birth at 31 weeks' gestation; respiratory insufficiency required extensive artificial ventilation in the neonatal period. After discharge home, she showed hypotonia with poor feeding and significant lactic acidosis and died unexpectedly at age 4 months. Skeletal muscle biopsy showed variation in the shape and size of muscle fibers, and atrophic fibers containing nemaline rods. Biochemical analysis showed complex I deficiency with borderline low complex III deficiency, the latter of which may have been an artifact.

In a patient with MC1DN25, Haack et al. (2012) identified compound heterozygosity for 2 mutations in the NDUFB3 gene (W22R; and G70X, 603839.0002). The mutations were identified by exome sequencing. The patient had encephalopathy, myopathy, hypotonia, developmental delay, and lactic acidosis. Complex I activity in patient fibroblasts was 17% of normal and the level of assembled complex I was decreased. Expression of wildtype NDUFB3 rescued the biochemical defect. Of note, complex IV and V were also slightly decreased in patient fibroblasts to 48% and 76% of controls, respectively; these latter defects were not altered by expression of wildtype NDUFB3. The findings established NDUFB3 as a gene responsible for human complex I deficiency.


ALLELIC VARIANTS 2 Selected Examples):

.0001   MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 25

NDUFB3, TRP22ARG
SNP: rs142609245, gnomAD: rs142609245, ClinVar: RCV000239318, RCV000504444, RCV000624796, RCV000735413

In a female infant, born of unrelated parents of British and Dutch descent, with severe lethal mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 618246), Calvo et al. (2012) identified a homozygous 64T-C transition in the NDUFB3 gene, resulting in a trp22-to-arg (W22R) substitution in a highly conserved residue. The unaffected mother was a carrier; DNA from the father was not available. Fibroblasts from the patient showed 2 to 15% residual complex I protein levels and activity, depending on the method used, and expression of wildtype NDUFB3 rescued the defect.


.0002   MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 25

NDUFB3, GLY70TER
SNP: rs200800978, gnomAD: rs200800978, ClinVar: RCV000033057, RCV000412836, RCV000624112

In a patient with mitochondrial complex I deficiency nuclear type 25 (MC1DN25; 618246), Haack et al. (2012) identified compound heterozygosity for 2 mutations in the NDUFB3 gene: the previously described W22R mutation (603839.0001) and a 208G-T transversion, resulting in a gly70-to-ter (G70X) substitution. The mutations were identified by exome sequencing. The patient had encephalopathy, myopathy, hypotonia, developmental delay, and lactic acidosis. Complex I activity in patient fibroblasts was 17% of normal and the level of assembled complex I was decreased. Expression of wildtype NDUFB3 rescued the biochemical defect. Of note, complex IV and V were also slightly decreased in patient fibroblasts to 48% and 76% of controls, respectively; these defects were not altered by expression of wildtype NDUFB3. The findings established NDUFB3 as a gene responsible for human complex I deficiency.


REFERENCES

  1. Calvo, S. E., Compton, A. G., Hershman, S. G., Lim, S. C., Lieber, D. S., Tucker, E. J., Laskowski, A., Garone, C., Liu, S., Jaffe, D. B., Christodoulou, J., Fletcher, J. M., Bruno, D. L., Goldblatt, J., DiMauro, S., Thorburn, D. R., Mootha, V. K. Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing. Sci. Transl. Med. 4: 118ra10, 2012. Note: Electronic Article. [PubMed: 22277967] [Full Text: https://doi.org/10.1126/scitranslmed.3003310]

  2. Haack, T. B., Haberberger, B., Frisch, E.-M., Wieland, T., Iuso, A., Gorza, M., Strecker, V., Graf, E., Mayr, J. A., Herberg, U., Hennermann, J. B., Klopstock, T., and 16 others. Molecular diagnosis in mitochondrial complex I deficiency using exome sequencing. J. Med. Genet. 49: 277-283, 2012. [PubMed: 22499348] [Full Text: https://doi.org/10.1136/jmedgenet-2012-100846]

  3. Jensen, L. L., Nielsen, M. M., Justesen, J., Hansen, L. L. Assignment of human NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 (NDUFB3) and of its four pseudogenes to human chromosomes 2q31.3, 1p13.3-p13.1, 9q32-q34.1, 14q22.3-q23.1 and 14q32.2 by radiation hybrid mapping. Cytogenet. Cell Genet. 93: 147-150, 2001. [PubMed: 11474204] [Full Text: https://doi.org/10.1159/000056973]

  4. Lamont, P. J., Thorburn, D. R., Fabian, V., Vajsar, J., Hawkins, C., Saada Reisch, A., Durling, H., Laing, N. G., Nevo, Y. Nemaline rods and complex I deficiency in three infants with hypotonia, motor delay and failure to thrive. Neuropediatrics 35: 302-306, 2004. [PubMed: 15534765] [Full Text: https://doi.org/10.1055/s-2004-821243]

  5. Ton, C., Hwang, D. M., Dempsey, A. A., Liew, C.-C. Identification and primary structure of five human NADH-ubiquinone oxidoreductase subunits. Biochem. Biophys. Res. Commun. 241: 589-594, 1997. [PubMed: 9425316] [Full Text: https://doi.org/10.1006/bbrc.1997.7707]


Contributors:
Cassandra L. Kniffin - updated : 11/29/2012
Cassandra L. Kniffin - updated : 2/1/2012
Carol A. Bocchini - updated : 8/28/2001

Creation Date:
Rebekah S. Rasooly : 5/25/1999

Edit History:
carol : 02/01/2021
carol : 12/13/2018
carol : 12/04/2012
ckniffin : 11/29/2012
carol : 2/3/2012
terry : 2/2/2012
ckniffin : 2/1/2012
carol : 8/28/2001
carol : 8/28/2001
alopez : 5/25/1999
alopez : 5/25/1999
alopez : 5/25/1999