Entry - *604041 - MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1; MPDU1 - OMIM
* 604041

MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1; MPDU1


Alternative titles; symbols

SUPPRESSOR OF LEC15; SL15
LEC35


HGNC Approved Gene Symbol: MPDU1

Cytogenetic location: 17p13.1     Genomic coordinates (GRCh38): 17:7,583,647-7,588,212 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
17p13.1 Congenital disorder of glycosylation, type If 609180 AR 3

TEXT

Cloning and Expression

MPD synthase (DPM1; 603503) catalyzes the synthesis of mannose-P-dolichol (MPD), an essential sugar donor for glycoconjugates and an essential substrate for synthesis of glycosylphosphatidylinositols (GPIs). The Chinese hamster ovary (CHO) Lec15 and Lec35 mutant cells are defective in synthesis and utilization, respectively, of MPD. Using an expression cloning strategy, Ware and Lehrman (1996) isolated SL15 (suppressor of Lec15), which was originally thought to correct the Lec15 phenotype and suppress the Lec35 mutation. In an erratum, the authors stated that correction of the Lec15 phenotype was not certain, but they remained confident that the SL15 cDNA suppressed the Lec35 mutation. Sequence analysis indicated that SL15 encodes a transmembrane protein with cytosolic C and N termini. There was no significant sequence similarity between SL15 and the S. cerevisiae MPD synthase, leading the authors to suggest that SL15 plays a distinct role in MPD synthesis. See also DPM2 (603564).

Mao et al. (1998) identified an umbilical cord blood CD34-positive cell cDNA encoding the human homolog of SL15. The predicted human protein contains 247 amino acids.


Mapping

By analysis of radiation hybrids, Mao et al. (1998) mapped the human SL15 gene to 17p13.1-p12.

Gross (2014) mapped the MPDU1 gene to chromosome 17p13.1 based on an alignment of the MPDU1 sequence (GenBank AF038961) with the genomic sequence (GRCh37).


Molecular Genetics

In 3 unrelated patients with congenital disorder of glycosylation type If (609180), Schenk et al. (2001) identified mutations in the MPDU1 gene: 2 patients of consanguineous parents were homozygotes (604041.0001 and 604041.0002, respectively) and the other was a compound heterozygote (604041.0003 and 604041.0004).

In a patient with CDG If, Kranz et al. (2001) identified a homozygous point mutation in the MPDU1 gene (604041.0005).


ALLELIC VARIANTS ( 5 Selected Examples):

.0001 CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, GLY73GLU
  
RCV000006225...

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified a homozygous 218G-A transition in the MPDU1 gene, resulting in a gly73-to-glu (G73E) substitution.


.0002 CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, LEU119PRO
  
RCV000006226

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified a homozygous 356T-C transition in the MPDU1 gene, resulting in a leu119-to-pro (L119P) substitution.


.0003 CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, MET1THR
  
RCV000006227

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified compound heterozygosity for mutations in the MPDU1 gene: a 2T-C transition, changing the initiating methionine to threonine (met1 to thr), and a 1-bp deletion (511delC; 604041.0004), resulting in a frameshift. The former was of maternal origin and the latter, paternal.


.0004 CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, 1-BP DEL, 511C
  
RCV000627435...

For discussion of the 1-bp deletion in the MPDU1 gene (511delC) that was found in compound heterozygous state in a patient with congenital disorder of glycosylation type If (CDG1F; 609180) by Schenk et al. (2001), see 604041.0003.


.0005 CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, LEU74SER
  
RCV000006229

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Kranz et al. (2001) identified a homozygous 221T-C transition in the MPDU1 gene, resulting in a leu74-to-ser (L74S) substitution. The parents were not known to be consanguineous, but both families had lived in the same village for generations.


REFERENCES

  1. Gross, M. B. Personal Communication. Baltimore, Md. 5/27/2014.

  2. Kranz, C., Denecke, J., Lehrman, M. A., Ray, S., Kienz, P., Kreissel, G., Sagi, D., Peter-Katalinic, J., Freeze, H. H., Schmid, T., Jackowski-Dohrmann, S., Harms, E., Marquardt, T. A mutation in the human MPDU1 gene causes congenital disorder of glycosylation type If (CDG-If). J. Clin. Invest. 108: 1613-1619, 2001. [PubMed: 11733556, images, related citations] [Full Text]

  3. Mao, M., Fu, G., Wu, J.-S., Zhang, Q.-H., Zhou, J., Kan, L.-X., Huang, Q.-H., He, K.-L., Gu, B.-W., Han, Z.-G., Shen, Y., Gu, J., Yu, Y.-P., Xu, S.-H., Wang, Y.-X., Chen, S.-J., Chen, Z. Identification of genes expressed in human CD34+ hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. Proc. Nat. Acad. Sci. 95: 8175-8180, 1998. [PubMed: 9653160, related citations] [Full Text]

  4. Schenk, B., Imbach, T., Frank, C. G., Grubenmann, C. E., Raymond, G. V., Hurvitz, H., Korn-Lubetzki, I., Revel-Vik, S., Raas-Rotschild, A., Luder, A. S., Jaeken, J., Berger, E. G., Matthijs, G., Hennet, T., Aebi, M. MPDU1 mutations underlie a novel human congenital disorder of glycosylation, designated type If. J. Clin. Invest. 108: 1687-1695, 2001. Note: Erratum: J. Clin. Invest. 111: 925 only, 2003. [PubMed: 11733564, images, related citations] [Full Text]

  5. Ware, F. E., Lehrman, M. A. Expression cloning of a novel suppressor of the Lec15 and Lec35 glycosylation mutations of Chinese hamster ovary cells. J. Biol. Chem. 271: 13935-13938, 1996. Note: Erratum: J. Biol. Chem. 273: 13366 only, 1998. [PubMed: 8663248, related citations] [Full Text]


Matthew B. Gross - updated : 5/27/2014
Marla J. F. O'Neill - updated : 1/28/2005
Creation Date:
Rebekah S. Rasooly : 7/22/1999
mcolton : 08/18/2015
mgross : 5/27/2014
carol : 9/19/2012
carol : 9/4/2012
joanna : 1/13/2011
tkritzer : 1/31/2005
terry : 1/28/2005
jlewis : 7/22/1999

* 604041

MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1; MPDU1


Alternative titles; symbols

SUPPRESSOR OF LEC15; SL15
LEC35


HGNC Approved Gene Symbol: MPDU1

SNOMEDCT: 724096007;  


Cytogenetic location: 17p13.1     Genomic coordinates (GRCh38): 17:7,583,647-7,588,212 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
17p13.1 Congenital disorder of glycosylation, type If 609180 Autosomal recessive 3

TEXT

Cloning and Expression

MPD synthase (DPM1; 603503) catalyzes the synthesis of mannose-P-dolichol (MPD), an essential sugar donor for glycoconjugates and an essential substrate for synthesis of glycosylphosphatidylinositols (GPIs). The Chinese hamster ovary (CHO) Lec15 and Lec35 mutant cells are defective in synthesis and utilization, respectively, of MPD. Using an expression cloning strategy, Ware and Lehrman (1996) isolated SL15 (suppressor of Lec15), which was originally thought to correct the Lec15 phenotype and suppress the Lec35 mutation. In an erratum, the authors stated that correction of the Lec15 phenotype was not certain, but they remained confident that the SL15 cDNA suppressed the Lec35 mutation. Sequence analysis indicated that SL15 encodes a transmembrane protein with cytosolic C and N termini. There was no significant sequence similarity between SL15 and the S. cerevisiae MPD synthase, leading the authors to suggest that SL15 plays a distinct role in MPD synthesis. See also DPM2 (603564).

Mao et al. (1998) identified an umbilical cord blood CD34-positive cell cDNA encoding the human homolog of SL15. The predicted human protein contains 247 amino acids.


Mapping

By analysis of radiation hybrids, Mao et al. (1998) mapped the human SL15 gene to 17p13.1-p12.

Gross (2014) mapped the MPDU1 gene to chromosome 17p13.1 based on an alignment of the MPDU1 sequence (GenBank AF038961) with the genomic sequence (GRCh37).


Molecular Genetics

In 3 unrelated patients with congenital disorder of glycosylation type If (609180), Schenk et al. (2001) identified mutations in the MPDU1 gene: 2 patients of consanguineous parents were homozygotes (604041.0001 and 604041.0002, respectively) and the other was a compound heterozygote (604041.0003 and 604041.0004).

In a patient with CDG If, Kranz et al. (2001) identified a homozygous point mutation in the MPDU1 gene (604041.0005).


ALLELIC VARIANTS 5 Selected Examples):

.0001   CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, GLY73GLU
SNP: rs104894586, gnomAD: rs104894586, ClinVar: RCV000006225, RCV000081186

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified a homozygous 218G-A transition in the MPDU1 gene, resulting in a gly73-to-glu (G73E) substitution.


.0002   CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, LEU119PRO
SNP: rs104894587, ClinVar: RCV000006226

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified a homozygous 356T-C transition in the MPDU1 gene, resulting in a leu119-to-pro (L119P) substitution.


.0003   CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, MET1THR
SNP: rs104894588, gnomAD: rs104894588, ClinVar: RCV000006227

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Schenk et al. (2001) identified compound heterozygosity for mutations in the MPDU1 gene: a 2T-C transition, changing the initiating methionine to threonine (met1 to thr), and a 1-bp deletion (511delC; 604041.0004), resulting in a frameshift. The former was of maternal origin and the latter, paternal.


.0004   CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, 1-BP DEL, 511C
SNP: rs756471132, gnomAD: rs756471132, ClinVar: RCV000627435, RCV001855335, RCV003987630

For discussion of the 1-bp deletion in the MPDU1 gene (511delC) that was found in compound heterozygous state in a patient with congenital disorder of glycosylation type If (CDG1F; 609180) by Schenk et al. (2001), see 604041.0003.


.0005   CONGENITAL DISORDER OF GLYCOSYLATION, TYPE If

MPDU1, LEU74SER
SNP: rs104894589, gnomAD: rs104894589, ClinVar: RCV000006229

In a patient with congenital disorder of glycosylation type If (CDG1F; 609180), Kranz et al. (2001) identified a homozygous 221T-C transition in the MPDU1 gene, resulting in a leu74-to-ser (L74S) substitution. The parents were not known to be consanguineous, but both families had lived in the same village for generations.


REFERENCES

  1. Gross, M. B. Personal Communication. Baltimore, Md. 5/27/2014.

  2. Kranz, C., Denecke, J., Lehrman, M. A., Ray, S., Kienz, P., Kreissel, G., Sagi, D., Peter-Katalinic, J., Freeze, H. H., Schmid, T., Jackowski-Dohrmann, S., Harms, E., Marquardt, T. A mutation in the human MPDU1 gene causes congenital disorder of glycosylation type If (CDG-If). J. Clin. Invest. 108: 1613-1619, 2001. [PubMed: 11733556] [Full Text: https://doi.org/10.1172/JCI13635]

  3. Mao, M., Fu, G., Wu, J.-S., Zhang, Q.-H., Zhou, J., Kan, L.-X., Huang, Q.-H., He, K.-L., Gu, B.-W., Han, Z.-G., Shen, Y., Gu, J., Yu, Y.-P., Xu, S.-H., Wang, Y.-X., Chen, S.-J., Chen, Z. Identification of genes expressed in human CD34+ hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. Proc. Nat. Acad. Sci. 95: 8175-8180, 1998. [PubMed: 9653160] [Full Text: https://doi.org/10.1073/pnas.95.14.8175]

  4. Schenk, B., Imbach, T., Frank, C. G., Grubenmann, C. E., Raymond, G. V., Hurvitz, H., Korn-Lubetzki, I., Revel-Vik, S., Raas-Rotschild, A., Luder, A. S., Jaeken, J., Berger, E. G., Matthijs, G., Hennet, T., Aebi, M. MPDU1 mutations underlie a novel human congenital disorder of glycosylation, designated type If. J. Clin. Invest. 108: 1687-1695, 2001. Note: Erratum: J. Clin. Invest. 111: 925 only, 2003. [PubMed: 11733564] [Full Text: https://doi.org/10.1172/JCI13419]

  5. Ware, F. E., Lehrman, M. A. Expression cloning of a novel suppressor of the Lec15 and Lec35 glycosylation mutations of Chinese hamster ovary cells. J. Biol. Chem. 271: 13935-13938, 1996. Note: Erratum: J. Biol. Chem. 273: 13366 only, 1998. [PubMed: 8663248] [Full Text: https://doi.org/10.1074/jbc.271.24.13935]


Contributors:
Matthew B. Gross - updated : 5/27/2014
Marla J. F. O'Neill - updated : 1/28/2005

Creation Date:
Rebekah S. Rasooly : 7/22/1999

Edit History:
mcolton : 08/18/2015
mgross : 5/27/2014
carol : 9/19/2012
carol : 9/4/2012
joanna : 1/13/2011
tkritzer : 1/31/2005
terry : 1/28/2005
jlewis : 7/22/1999