Entry - #615596 - CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Iw, AUTOSOMAL RECESSIVE; CDG1WAR - OMIM

# 615596

CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Iw, AUTOSOMAL RECESSIVE; CDG1WAR


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
11q24.2 Congenital disorder of glycosylation, type Iw, autosomal recessive 615596 AR 3 STT3A 601134
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal recessive
GROWTH
Other
- Failure to thrive
HEAD & NECK
Head
- Microcephaly
Eyes
- Poor visual tracking
- Optic atrophy
ABDOMEN
Gastrointestinal
- Poor feeding
NEUROLOGIC
Central Nervous System
- Delayed psychomotor development
- Mental retardation
- Hypotonia
- Seizures
- Cerebellar atrophy
LABORATORY ABNORMALITIES
- Abnormal glycosylation of serum transferrin, type 1 pattern
- Incomplete N-glycosylation of cellular proteins
MISCELLANEOUS
- One family has been reported (last curated January 2014)
- Onset at birth
MOLECULAR BASIS
- Caused by mutation in the STT3, subunit of the oligosaccharyltransferase complex, S. cerevisiae, homolog of, A gene (STT3A, 601134.0001)
Congenital disorders of glycosylation, type I - PS212065 - 29 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p36.12 Congenital disorder of glycosylation, type Ir AR 3 614507 DDOST 602202
1p36.11 Retinitis pigmentosa 59 AR 3 613861 DHDDS 608172
1p36.11 ?Congenital disorder of glycosylation, type 1bb AR 3 613861 DHDDS 608172
1p31.3 Congenital disorder of glycosylation, type Ic AR 3 603147 ALG6 604566
1p31.3 Congenital disorder of glycosylation, type It AR 3 614921 PGM1 171900
1q22 Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 15 AR 3 612937 DPM3 605951
3p23 Congenital disorder of glycosylation, type Ix AR 3 615597 STT3B 608605
3p21.1 Congenital disorder of glycosylation, type In AR 3 612015 RFT1 611908
3q27.1 Congenital disorder of glycosylation, type Id AR 3 601110 ALG3 608750
4q12 Congenital disorder of glycosylation, type Iq AR 3 612379 SRD5A3 611715
6q22.1 ?Congenital disorder of glycosylation, type 1aa AR 3 617082 NUS1 610463
9q22.33 Congenital disorder of glycosylation, type Ii AR 3 607906 ALG2 607905
9q34.11 Congenital disorder of glycosylation, type Iu AR 3 615042 DPM2 603564
9q34.11 Congenital disorder of glycosylation, type Im AR 3 610768 DOLK 610746
11q14.1 Congenital disorder of glycosylation, type Ih AR 3 608104 ALG8 608103
11q23.1 Congenital disorder of glycosylation, type Il AR 3 608776 ALG9 606941
11q23.3 Congenital disorder of glycosylation, type Ij AR 3 608093 DPAGT1 191350
11q24.2 Congenital disorder of glycosylation, type Iw, autosomal recessive AR 3 615596 STT3A 601134
12q24.31 Cutis laxa, autosomal recessive, type IIA AR 3 219200 ATP6V0A2 611716
13q14.3 Congenital disorder of glycosylation, type Ip AR 3 613661 ALG11 613666
15q24.1-q24.2 Congenital disorder of glycosylation, type Ib AR 3 602579 MPI 154550
16p13.3 Congenital disorder of glycosylation, type Ik AR 3 608540 ALG1 605907
16p13.2 Congenital disorder of glycosylation, type Ia AR 3 212065 PMM2 601785
17p13.1 Congenital disorder of glycosylation, type If AR 3 609180 MPDU1 604041
20q13.13 Congenital disorder of glycosylation, type Ie AR 3 608799 DPM1 603503
22q13.33 Congenital disorder of glycosylation, type Ig AR 3 607143 ALG12 607144
Xq21.1 Congenital disorder of glycosylation, type Icc XLR 3 301031 MAGT1 300715
Xq23 Developmental and epileptic encephalopathy 36 XL 3 300884 ALG13 300776
Xq28 Congenital disorder of glycosylation, type Iy XLR 3 300934 SSR4 300090

TEXT

A number sign (#) is used with this entry because of evidence that autosomal recessive congenital disorder of glycosylation type Iw (CDG1WAR) is caused by homozygous mutation in the STT3A gene (601134) on chromosome 11q24.


Clinical Features

Shrimal et al. (2013) reported 2 sibs, born of consanguineous Pakistani parents, with autosomal recessive congenital disorder of glycosylation. The patients had delayed psychomotor development with impaired intellectual development, microcephaly, failure to thrive, seizures, hypotonia, and cerebellar atrophy. At age 13 years, 1 was more severely delayed, with inability to sit, poor visual tracking, and intractable seizures. Serum transferrin studies showed abnormal glycosylation consistent with a type I pattern.

Ghosh et al. (2017) reported 5 affected individuals, ranging in age from 6 to 28 years, from a multiply consanguineous Pakistani family segregating congenital disorder of glycosylation type I. All 5 individuals had a homozygous mutation in the STT3A gene and all had developmental delay, impaired intellectual development, and seizures. Two individuals (IV-1 and IV-2), who also had deletions involving the TUSC3 gene in heterozygous (IV-2) or homozygous (IV-1) state, had optic atrophy and episodes of reduced consciousness and hypothermia that was suggestive of hypothalamic dysfunction. Patient IV-1 had a more severe clinical neurodevelopmental course compared to the other affected family members. Feeding problems requiring gastrostomy tube insertion was reported in 3 individuals (IV-1, IV-2, III-7), one of whom (IV-1) also had failure to thrive. Two individuals (III-7 and III-8) had sleep disturbances, 3 (III-7, III-8, and III-9) had stereotypic behaviors, and 1 (III-9) had self-injurious behaviors. A 1-month-old family member (IV-4) with an STT3A mutation was asymptomatic at the time of evaluation.


Inheritance

The transmission pattern of type I congenital disorder of glycosylation in the family reported by Shrimal et al. (2013) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 2 sibs, born of consanguineous Pakistani parents, with autosomal recessive congenital disorder of glycosylation type Iw, Shrimal et al. (2013) identified a homozygous missense mutation in the STT3A gene (V626A; 601134.0001). The mutation was found by homozygosity mapping and candidate gene sequencing. Patient cells showed reduced amounts of the STT3A protein. Patient cells also showed incomplete N-glycosylation of a GFP biomarker that was complemented by wildtype STT3A, as well as lower glycosylation of the STT3A substrates prosaposin (PSAP; 176801) and granulin (GRN; 138945) compared to control cells.

Ghosh et al. (2017) identified homozygosity for the V626A mutation in the STT3A gene in 5 individuals from a multiply consanguineous Pakistani family with CDG1WAR. The mutation was identified by autozygosity mapping and whole-exome sequencing and was confirmed by Sanger sequencing in all affected individuals. Two of those affected were also homozygous (patient IV-1) or heterozygous (patient IV-2) for a partial deletion of the TUSC3 gene (601385); patient IV-1 had a more severe neurodevelopmental clinical course compared to other affected family members, whereas patient IV-2 had a similar phenotype to family members with only the STT3A mutation.


REFERENCES

  1. Ghosh, A., Urquhart, J., Daly, S., Ferguson, A., Scotcher, D., Morris, A. A. M., Clayton-Smith, J. Phenotypic heterogeneity in a congenital disorder of glycosylation caused by mutations in STT3A. J. Child Neurol. 32: 560-575, 2017. [PubMed: 28424003, related citations] [Full Text]

  2. Shrimal, S., Ng, B. G., Losfeld, M.-E., Gilmore, R., Freeze, H. H. Mutations in STT3A and STT3B cause two congenital disorders of glycosylation. Hum. Molec. Genet. 22: 4638-4645, 2013. [PubMed: 23842455, images, related citations] [Full Text]


Contributors:
Hilary J. Vernon - updated : 08/31/2020
Creation Date:
Cassandra L. Kniffin : 1/9/2014
alopez : 05/15/2024
carol : 01/20/2022
carol : 01/20/2022
carol : 09/01/2020
carol : 08/31/2020
carol : 07/21/2017
carol : 03/27/2017
carol : 01/10/2014
mcolton : 1/10/2014
ckniffin : 1/9/2014

# 615596

CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Iw, AUTOSOMAL RECESSIVE; CDG1WAR


ORPHA: 370921;   DO: 0080572;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
11q24.2 Congenital disorder of glycosylation, type Iw, autosomal recessive 615596 Autosomal recessive 3 STT3A 601134

TEXT

A number sign (#) is used with this entry because of evidence that autosomal recessive congenital disorder of glycosylation type Iw (CDG1WAR) is caused by homozygous mutation in the STT3A gene (601134) on chromosome 11q24.


Clinical Features

Shrimal et al. (2013) reported 2 sibs, born of consanguineous Pakistani parents, with autosomal recessive congenital disorder of glycosylation. The patients had delayed psychomotor development with impaired intellectual development, microcephaly, failure to thrive, seizures, hypotonia, and cerebellar atrophy. At age 13 years, 1 was more severely delayed, with inability to sit, poor visual tracking, and intractable seizures. Serum transferrin studies showed abnormal glycosylation consistent with a type I pattern.

Ghosh et al. (2017) reported 5 affected individuals, ranging in age from 6 to 28 years, from a multiply consanguineous Pakistani family segregating congenital disorder of glycosylation type I. All 5 individuals had a homozygous mutation in the STT3A gene and all had developmental delay, impaired intellectual development, and seizures. Two individuals (IV-1 and IV-2), who also had deletions involving the TUSC3 gene in heterozygous (IV-2) or homozygous (IV-1) state, had optic atrophy and episodes of reduced consciousness and hypothermia that was suggestive of hypothalamic dysfunction. Patient IV-1 had a more severe clinical neurodevelopmental course compared to the other affected family members. Feeding problems requiring gastrostomy tube insertion was reported in 3 individuals (IV-1, IV-2, III-7), one of whom (IV-1) also had failure to thrive. Two individuals (III-7 and III-8) had sleep disturbances, 3 (III-7, III-8, and III-9) had stereotypic behaviors, and 1 (III-9) had self-injurious behaviors. A 1-month-old family member (IV-4) with an STT3A mutation was asymptomatic at the time of evaluation.


Inheritance

The transmission pattern of type I congenital disorder of glycosylation in the family reported by Shrimal et al. (2013) was consistent with autosomal recessive inheritance.


Molecular Genetics

In 2 sibs, born of consanguineous Pakistani parents, with autosomal recessive congenital disorder of glycosylation type Iw, Shrimal et al. (2013) identified a homozygous missense mutation in the STT3A gene (V626A; 601134.0001). The mutation was found by homozygosity mapping and candidate gene sequencing. Patient cells showed reduced amounts of the STT3A protein. Patient cells also showed incomplete N-glycosylation of a GFP biomarker that was complemented by wildtype STT3A, as well as lower glycosylation of the STT3A substrates prosaposin (PSAP; 176801) and granulin (GRN; 138945) compared to control cells.

Ghosh et al. (2017) identified homozygosity for the V626A mutation in the STT3A gene in 5 individuals from a multiply consanguineous Pakistani family with CDG1WAR. The mutation was identified by autozygosity mapping and whole-exome sequencing and was confirmed by Sanger sequencing in all affected individuals. Two of those affected were also homozygous (patient IV-1) or heterozygous (patient IV-2) for a partial deletion of the TUSC3 gene (601385); patient IV-1 had a more severe neurodevelopmental clinical course compared to other affected family members, whereas patient IV-2 had a similar phenotype to family members with only the STT3A mutation.


REFERENCES

  1. Ghosh, A., Urquhart, J., Daly, S., Ferguson, A., Scotcher, D., Morris, A. A. M., Clayton-Smith, J. Phenotypic heterogeneity in a congenital disorder of glycosylation caused by mutations in STT3A. J. Child Neurol. 32: 560-575, 2017. [PubMed: 28424003] [Full Text: https://doi.org/10.1177/0883073817696816]

  2. Shrimal, S., Ng, B. G., Losfeld, M.-E., Gilmore, R., Freeze, H. H. Mutations in STT3A and STT3B cause two congenital disorders of glycosylation. Hum. Molec. Genet. 22: 4638-4645, 2013. [PubMed: 23842455] [Full Text: https://doi.org/10.1093/hmg/ddt312]


Contributors:
Hilary J. Vernon - updated : 08/31/2020

Creation Date:
Cassandra L. Kniffin : 1/9/2014

Edit History:
alopez : 05/15/2024
carol : 01/20/2022
carol : 01/20/2022
carol : 09/01/2020
carol : 08/31/2020
carol : 07/21/2017
carol : 03/27/2017
carol : 01/10/2014
mcolton : 1/10/2014
ckniffin : 1/9/2014