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Select item 110713391.

Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation

Kok Jun Liew, Saleha Shahar, Mohd Shahir Shamsir, Nawal Binti Shaharuddin, Chee Hung Liang, Kok-Gan Chan, Stephen Brian Pointing, Rajesh Kumar Sani, Kian Mau Goh

Environ Microbiome. 2024; 19: 29. Published online 2024 May 6. doi: 10.1186/s40793-024-00572-7

PMCID:: PMC11071339

Abstract Article PDF–11M

Select item 110445672.

OrthoRefine: automated enhancement of prior ortholog identification via synteny

J. Ludwig, J. Mrázek

BMC Bioinformatics. 2024; 25: 163. Published online 2024 Apr 25. doi: 10.1186/s12859-024-05786-7

PMCID:: PMC11044567

Abstract Article PDF–3.7M

Select item 110067383.

The role of soluble adenylyl cyclase in sensing and regulating intracellular pH

Hang Lam Li, Arthur Verhoeven, Ronald Oude Elferink

Pflugers Arch. 2024; 476(4): 457–465. Published online 2024 Apr 6. doi: 10.1007/s00424-024-02952-x

PMCID:: PMC11006738

Abstract Article PDF–510K

Select item 110779714.

Chloroflexus aurantiacus acetyl-CoA carboxylase evolves fused biotin carboxylase and biotin carboxyl carrier protein to complete carboxylation activity

Jiejie Shen, Wenping Wu, Kangle Wang, Jingyi Wu, Bing Liu, Chunyang Li, Zijun Gong, Xin Hong, Han Fang, Xingwei Zhang, Xiaoling Xu

mBio. 2024 May; 15(5): e03414-23. Published online 2024 Apr 4. doi: 10.1128/mbio.03414-23

PMCID:: PMC11077971

Abstract Article PDF–2.5M

Select item 109727525.

Anoxygenic phototroph of the Chloroflexota uses a type I reaction centre

J. M. Tsuji, N. A. Shaw, S. Nagashima, J. J. Venkiteswaran, S. L. Schiff, T. Watanabe, M. Fukui, S. Hanada, M. Tank, J. D. Neufeld

Nature. 2024; 627(8005): 915–922. Published online 2024 Mar 13. doi: 10.1038/s41586-024-07180-y

PMCID:: PMC10972752

Abstract Article PDF–15M

Select item 108819766.

Increased CO₂ fixation enables high carbon-yield production of 3-hydroxypropionic acid in yeast

Ning Qin, Lingyun Li, Xiaozhen Wan, Xu Ji, Yu Chen, Chaokun Li, Ping Liu, Yijie Zhang, Weijie Yang, Junfeng Jiang, Jianye Xia, Shuobo Shi, Tianwei Tan, Jens Nielsen, Yun Chen, Zihe Liu

Nat Commun. 2024; 15: 1591. Published online 2024 Feb 21. doi: 10.1038/s41467-024-45557-9

PMCID:: PMC10881976

Abstract Article PDF–2.2M

Select item 109142527.

Characteristics of bacterial communities in rhizosphere and bulk soil in Fe-deficient citrus growing in coastal saline-alkali land

Tianchi Jiang, Jiuzhou Chen, Yu Huang, Xiaoyan Chang, Yuping Wu, Gaoping Liu, Runze Wang, Kuan Xu, Lingli Lu, Haizhong Lin, Shengke Tian

Front Plant Sci. 2023; 14: 1335843. Published online 2024 Feb 20. doi: 10.3389/fpls.2023.1335843

PMCID:: PMC10914252

Abstract Article PDF–13M

Select item 108743998.

Costs of ribosomal RNA stabilization affect ribosome composition at maximum growth rate

Diana Széliová, Stefan Müller, Jürgen Zanghellini

Commun Biol. 2024; 7: 196. Published online 2024 Feb 17. doi: 10.1038/s42003-024-05815-4

Correction in:: Commun Biol. 2024; 7: 444.

PMCID:: PMC10874399

Abstract Article PDF–1.8M

Select item 109276339.

Draft genome of Chloroflexus sp. MS-CIW-1, of the Chloroflexus sp. MS-G group from Mushroom Spring, Yellowstone National Park

Amanda N. Shelton, Feiqiao B. Yu, Freddy Bunbury, Jia Yan, Carlos Rivas, Arthur Grossman, Devaki Bhaya

Microbiol Resour Announc. 2024 Mar; 13(3): e00710-23. Published online 2024 Feb 1. doi: 10.1128/mra.00710-23

PMCID:: PMC10927633

Abstract Article PDF–151K

Select item 1079907110.

Prediction of lung cancer using novel biomarkers based on microbiome profiling of bronchoalveolar lavage fluid

Gihyeon Kim, Changho Park, Young Kwang Yoon, Dongil Park, Jeong Eun Lee, Dahye Lee, Pureum Sun, Shinyoung Park, Changhee Yun, Da Hyun Kang, Chaeuk Chung

Sci Rep. 2024; 14: 1691. Published online 2024 Jan 19. doi: 10.1038/s41598-024-52296-w

PMCID:: PMC10799071

Abstract Article PDF–1.2M

Select item 1078788011.

Structural and functional characterization of a new thermophilic-like OYE from Aspergillus flavus

Na Li, Yuan Wang, Yinyin Meng, Yangyong Lv, Shuaibing Zhang, Shan Wei, Pingan Ma, Yuansen Hu, Hui Lin

Appl Microbiol Biotechnol. 2024; 108(1): 134. Published online 2024 Jan 13. doi: 10.1007/s00253-023-12963-w

PMCID:: PMC10787880

Abstract Article PDF–1.3M

Select item 1074600812.

Geographic and Ecological Diversity of Green Sulfur Bacteria in Hot Spring Mat Communities

Donna L. Bedard, Greta Van Slyke, Ulrich Nübel, Mary M. Bateson, Sue Brumfield, Yong Jun An, Eric D. Becraft, Jason M. Wood, Vera Thiel, David M. Ward

Microorganisms. 2023 Dec; 11(12): 2921. Published online 2023 Dec 4. doi: 10.3390/microorganisms11122921

PMCID:: PMC10746008

Abstract Article PDF–5.9M

Select item 1099286113.

Current status of carbon monoxide dehydrogenases (CODH) and their potential for electrochemical applications

Rebecca Bährle, Stefanie Böhnke, Jonas Englhard, Julien Bachmann, Mirjam Perner

Bioresour Bioprocess. 2023 Dec; 10(1): 84. Published online 2023 Nov 27. doi: 10.1186/s40643-023-00705-9

PMCID:: PMC10992861

Abstract Article PDF–2.1M

Select item 1072930014.

Machine Learning-Supported Enzyme Engineering toward Improved CO₂-Fixation of Glycolyl-CoA Carboxylase

Daniel G. Marchal, Luca Schulz, Ingmar Schuster, Jelena Ivanovska, Nicole Paczia, Simone Prinz, Jan Zarzycki, Tobias J. Erb

ACS Synth Biol. 2023 Dec 15; 12(12): 3521–3530. Published online 2023 Nov 20. doi: 10.1021/acssynbio.3c00403

PMCID:: PMC10729300

Abstract Article PDF–4.6M

Select item 1065937015.

Ammonia-oxidizing archaea and bacteria differentially contribute to ammonia oxidation in soil under precipitation gradients and land legacy

Soumyadev Sarkar, Anna Kazarina, Paige M. Hansen, Kaitlyn Ward, Christopher Hargreaves, Nicholas Reese, Qinghong Ran, Willow Kessler, Ligia F.T. de Souza, Terry D. Loecke, Marcos V. M. Sarto, Charles W. Rice, Lydia H. Zeglin, Benjamin A. Sikes, Sonny T.M. Lee

Version 1. bioRxiv. Preprint. 2023 Nov 12. doi: 10.1101/2023.11.08.566028

PMCID:: PMC10659370

Abstract Article PDF–4.0M

Select item 1070432416.

A novel family of sugar-specific phosphodiesterases that remove zwitterionic modifications of GlcNAc

Samantha L. Fossa, Brian P. Anton, Daniel W. Kneller, Laudine M.C. Petralia, Mehul B. Ganatra, Madison L. Boisvert, Saulius Vainauskas, Siu-Hong Chan, Cornelis H. Hokke, Jeremy M. Foster, Christopher H. Taron

J Biol Chem. 2023 Dec; 299(12): 105437. Published online 2023 Nov 7. doi: 10.1016/j.jbc.2023.105437

PMCID:: PMC10704324

Abstract Article PDF–2.0M

Select item 1058225817.

Human consumption of seaweed and freshwater aquatic plants in ancient Europe

Stephen Buckley, Karen Hardy, Fredrik Hallgren, Lucy Kubiak-Martens, Žydrūnė Miliauskienė, Alison Sheridan, Iwona Sobkowiak-Tabaka, Maria Eulalia Subirà

Nat Commun. 2023; 14: 6192. Published online 2023 Oct 17. doi: 10.1038/s41467-023-41671-2