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Select item 110102221.

De novo transcriptome reveals blood coagulation/antithrombin factors and infection mechanisms in Angiostrongylus cantonensis adult worms

Leandro de Mattos Pereira, Milene Pereira Guimarães de Jezuz, Amaranta Ramos Rangel, Bruna Dalcin Baldasso, Amanda Bungi Zaluski, Carlos Graeff-Teixeira, Alessandra Loureiro Morassutti

Parasitology. 2021 Jun; 148(7): 857–870. Published online 2021 Mar 17. doi: 10.1017/S0031182021000469

PMCID:: PMC11010222

Abstract Article PDF–924K

Select item 95700702.

Bioinformatic Assessment of Factors Affecting the Correlation between Protein Abundance and Elongation Efficiency in Prokaryotes

Aleksandra E. Korenskaia, Yury G. Matushkin, Sergey A. Lashin, Alexandra I. Klimenko

Int J Mol Sci. 2022 Oct; 23(19): 11996. Published online 2022 Oct 9. doi: 10.3390/ijms231911996

PMCID:: PMC9570070

Abstract Article PDF–2.2M

Select item 79381223.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 78091574.

Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorder

Mingbang Wang, Ceymi Doenyas, Jing Wan, Shujuan Zeng, Chunquan Cai, Jiaxiu Zhou, Yanqing Liu, Zhaoqing Yin, Wenhao Zhou

Comput Struct Biotechnol J. 2021; 19: 545–554. Published online 2020 Dec 29. doi: 10.1016/j.csbj.2020.12.012

PMCID:: PMC7809157

Abstract Article PDF–1.8M

Select item 60173795.

Reconstructing Phylogeny by Aligning Multiple Metabolic Pathways Using Functional Module Mapping

Yiran Huang, Cheng Zhong, Hai Xiang Lin, Jianyi Wang, Yuzhong Peng

Molecules. 2018 Feb; 23(2): 486. Published online 2018 Feb 23. doi: 10.3390/molecules23020486

PMCID:: PMC6017379

Abstract Article PDF–7.0M

Select item 40414206.

Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics

Naama Wald, Hanah Margalit

Nucleic Acids Res. 2014 Jun 1; 42(10): 6552–6566. Published online 2014 Apr 29. doi: 10.1093/nar/gku245

PMCID:: PMC4041420

Abstract Article PDF–2.7M

Select item 27981587.

Assessing the Quality of Whole Genome Alignments in Bacteria

Firas Swidan, Ron Shamir

Adv Bioinformatics. 2009; 2009: 749027. Published online 2009 Nov 15. doi: 10.1155/2009/749027

PMCID:: PMC2798158

Abstract Article PDF–608K

Select item 23435978.

Phagocytosis and intracellular killing of MD-2 opsonized Gram-negative bacteria depend on TLR4 signaling

Vishal Jain, Annett Halle, Kristen A. Halmen, Egil Lien, Marie Charrel-Dennis, Sanjay Ram, Douglas T. Golenbock, Alberto Visintin

Blood. 2008 May 1; 111(9): 4637–4645. Prepublished online 2008 Jan 18. doi: 10.1182/blood-2007-11-126862

PMCID:: PMC2343597

Abstract Article

Select item 22039879.

Differential epithelial expression of the putative innate immune molecule SPLUNC1 in Cystic Fibrosis

Lynne Bingle, Frances A Barnes, Simon S Cross, Doris Rassl, William A Wallace, Michael A Campos, Colin D Bingle

Respir Res. 2007; 8(1): 79. Published online 2007 Nov 7. doi: 10.1186/1465-9921-8-79

PMCID:: PMC2203987

Abstract Article PDF–1.3M

Select item 195054610.

Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNA^Lys recognition

Daniel Klaiman, Michal Amitsur, Shani Blanga-Kanfi, Michal Chai, Darrell R. Davis, Gabriel Kaufmann

Nucleic Acids Res. 2007 Jul; 35(14): 4704–4714. Published online 2007 Jun 29. doi: 10.1093/nar/gkm494

PMCID:: PMC1950546

Abstract Article PDF–11M

Select item 185231611.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 143593612.

GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes

Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yoichi Nakayama, Masaru Tomita

BMC Bioinformatics. 2006; 7: 168. Published online 2006 Mar 23. doi: 10.1186/1471-2105-7-168

PMCID:: PMC1435936

Abstract Article PDF–525K

Select item 143154313.

Variations in gene organization and DNA uptake signal sequence in the folP region between commensal and pathogenic Neisseria species

Yvonne Qvarnstrom, Gote Swedberg

BMC Microbiol. 2006; 6: 11. Published online 2006 Feb 17. doi: 10.1186/1471-2180-6-11

PMCID:: PMC1431543

Abstract Article PDF–495K

Select item 131687814.

Preferential attachment in the evolution of metabolic networks

Sara Light, Per Kraulis, Arne Elofsson

BMC Genomics. 2005; 6: 159. Published online 2005 Nov 10. doi: 10.1186/1471-2164-6-159

PMCID:: PMC1316878

Abstract Article PDF–381K

Select item 127095115.

Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs

Uri Laserson, Hin Hark Gan, Tamar Schlick

Nucleic Acids Res. 2005; 33(18): 6057–6069. Published online 2005 Oct 27. doi: 10.1093/nar/gki911

PMCID:: PMC1270951

Abstract Article PDF–691K

Select item 126635016.

Phylogenetic detection of conserved gene clusters in microbial genomes

Yu Zheng, Brian P Anton, Richard J Roberts, Simon Kasif

BMC Bioinformatics. 2005; 6: 243. Published online 2005 Oct 3. doi: 10.1186/1471-2105-6-243

PMCID:: PMC1266350

Abstract Article PDF–352K

Select item 53387117.

A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land

Fabia U Battistuzzi, Andreia Feijao, S Blair Hedges

BMC Evol Biol. 2004; 4: 44. Published online 2004 Nov 9. doi: 10.1186/1471-2148-4-44

PMCID:: PMC533871

Abstract Article PDF–593K

Select item 51677118.

Dam inactivation in Neisseria meningitidis: prevalence among diverse hyperinvasive lineages

Keith A Jolley, Li Sun, E Richard Moxon, Martin CJ Maiden

BMC Microbiol. 2004; 4: 34. Published online 2004 Aug 31. doi: 10.1186/1471-2180-4-34

PMCID:: PMC516771

Abstract Article PDF–304K

Select item 18664419.

Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast

Fiona S.L. Brinkman, Jeffrey L. Blanchard, Artem Cherkasov, Yossef Av-Gay, Robert C. Brunham, Rachel C. Fernandez, B. Brett Finlay, Sarah P. Otto, B.F. Francis Ouellette, Patrick J. Keeling, Ann M. Rose, Robert E.W. Hancock, Steven J.M. Jones

Genome Res. 2002 Aug; 12(8): 1159–1167. doi: 10.1101/gr.341802