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Items: 11

Select item 108658271.

Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea

Kira S. Makarova, Changyi Zhang, Yuri I. Wolf, Svetlana Karamycheva, Rachel J. Whitaker, Eugene V. Koonin

mBio. 2024 Feb; 15(2): e03092-23. Published online 2024 Jan 8. doi: 10.1128/mbio.03092-23

PMCID:: PMC10865827

Abstract Article PDF–2.4M

Select item 43908872.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Abstract Article PDF–1019K

Select item 22379003.

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622

PMCID:: PMC2237900

Abstract Article PDF–541K

Select item 18523164.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 17943985.

Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism

Atsushi Yamagata, John A Tainer

EMBO J. 2007 Feb 7; 26(3): 878–890. Published online 2007 Jan 25. doi: 10.1038/sj.emboj.7601544

PMCID:: PMC1794398

Abstract Article PDF–896K

Select item 95700296.

Archaea Microbiome Dysregulated Genes and Pathways as Molecular Targets for Lung Adenocarcinoma and Squamous Cell Carcinoma

Matthew Uzelac, Yuxiang Li, Jaideep Chakladar, Wei Tse Li, Weg M. Ongkeko

Int J Mol Sci. 2022 Oct; 23(19): 11566. Published online 2022 Sep 30. doi: 10.3390/ijms231911566

PMCID:: PMC9570029

Abstract Article PDF–3.8M

Select item 79381227.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 42607178.

Phylogenetic analysis and evolutionary origins of DNA polymerase X-family members

Rachelle J. Bienstock, William A. Beard, Samuel H. Wilson

DNA Repair (Amst) Author manuscript; available in PMC 2015 Oct 1.

Published in final edited form as: DNA Repair (Amst). 2014 Oct; 22: 77–88. Published online 2014 Aug 9. doi: 10.1016/j.dnarep.2014.07.003

PMCID:: PMC4260717

Abstract Article PDF–1.9M

Select item 39276079.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 303787810.

An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea

Gemma C Atkinson, Vasili Hauryliuk, Tanel Tenson

BMC Evol Biol. 2011; 11: 22. Published online 2011 Jan 21. doi: 10.1186/1471-2148-11-22

PMCID:: PMC3037878

Abstract Article PDF–1.2M

Select item 261419611.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

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