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Items: 18

Select item 93048611.

An Abundant and Diverse New Family of Electron Bifurcating Enzymes With a Non-canonical Catalytic Mechanism

Gerrit J. Schut, Dominik K. Haja, Xiang Feng, Farris L. Poole, Huilin Li, Michael W. W. Adams

Front Microbiol. 2022; 13: 946711. Published online 2022 Jul 8. doi: 10.3389/fmicb.2022.946711

PMCID:: PMC9304861

Abstract Article PDF–20M

Select item 79381222.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 51353333.

Evolutionary switches between two serine codon sets are driven by selection

Igor B. Rogozin, Frida Belinky, Vladimir Pavlenko, Svetlana A. Shabalina, David M. Kristensen, Eugene V. Koonin

Proc Natl Acad Sci U S A. 2016 Nov 15; 113(46): 13109–13113. Published online 2016 Oct 31. doi: 10.1073/pnas.1615832113

PMCID:: PMC5135333

Abstract Article PDF–880K

Select item 39276074.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 30739125.

Molecular evolution of urea amidolyase and urea carboxylase in fungi

Pooja K Strope, Kenneth W Nickerson, Steven D Harris, Etsuko N Moriyama

BMC Evol Biol. 2011; 11: 80. Published online 2011 Mar 29. doi: 10.1186/1471-2148-11-80

PMCID:: PMC3073912

Abstract Article PDF–549K

Select item 27981586.

Assessing the Quality of Whole Genome Alignments in Bacteria

Firas Swidan, Ron Shamir

Adv Bioinformatics. 2009; 2009: 749027. Published online 2009 Nov 15. doi: 10.1155/2009/749027

PMCID:: PMC2798158

Abstract Article PDF–608K

Select item 20753657.

Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193

PMCID:: PMC2075365

Abstract Article PDF–295K

Select item 11602588.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue

Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue): W471–W479. Published online 2005 Jun 27. doi: 10.1093/nar/gki498

PMCID:: PMC1160258

Abstract Article PDF–375K

Select item 64517449.

Evolution of endonuclease IV protein family: an in silico analysis

Swarna Kanchan, Parva Sharma, Shibasish Chowdhury

3 Biotech. 2019 May; 9(5): 168. Published online 2019 Apr 6. doi: 10.1007/s13205-019-1696-6

PMCID:: PMC6451744

Abstract Article PDF–2.1M

Select item 601737910.

Reconstructing Phylogeny by Aligning Multiple Metabolic Pathways Using Functional Module Mapping

Yiran Huang, Cheng Zhong, Hai Xiang Lin, Jianyi Wang, Yuzhong Peng

Molecules. 2018 Feb; 23(2): 486. Published online 2018 Feb 23. doi: 10.3390/molecules23020486

PMCID:: PMC6017379

Abstract Article PDF–7.0M

Select item 549509411.

Identification of a Novel Epoxyqueuosine Reductase Family by Comparative Genomics

Rémi Zallot, Robert Ross, Wei-Hung Chen, Steven D. Bruner, Patrick A. Limbach, Valérie de Crécy-Lagard

ACS Chem Biol. 2017 Mar 17; 12(3): 844–851. Published online 2017 Jan 27. doi: 10.1021/acschembio.6b01100

PMCID:: PMC5495094

Abstract Article PDF–1.2M

Select item 491898112.

Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer

Raquel Bromberg, Nick V. Grishin, Zbyszek Otwinowski

PLoS Comput Biol. 2016 Jun; 12(6): e1004985. Published online 2016 Jun 23. doi: 10.1371/journal.pcbi.1004985

PMCID:: PMC4918981

Abstract Article PDF–1.6M

Select item 402079113.

Protein Languages Differ Depending on Microorganism Lifestyle

Joseph J. Grzymski, Adam G. Marsh

PLoS One. 2014; 9(5): e96910. Published online 2014 May 14. doi: 10.1371/journal.pone.0096910

PMCID:: PMC4020791

Abstract Article PDF–1.7M

Select item 297464214.

Distribution Analysis of Hydrogenases in Surface Waters of Marine and Freshwater Environments

Martin Barz, Christian Beimgraben, Torsten Staller, Frauke Germer, Friederike Opitz, Claudia Marquardt, Christoph Schwarz, Kirstin Gutekunst, Klaus Heinrich Vanselow, Ruth Schmitz, Julie LaRoche, Rüdiger Schulz, Jens Appel

PLoS One. 2010; 5(11): e13846. Published online 2010 Nov 5. doi: 10.1371/journal.pone.0013846

PMCID:: PMC2974642

Abstract Article PDF–850K

Select item 266216615.

Flavin Nucleotide Metabolism in Plants: MONOFUNCTIONAL ENZYMES SYNTHESIZE FAD IN PLASTIDS

Francisco J. Sandoval, Yi Zhang, Sanja Roje

J Biol Chem. 2008 Nov 7; 283(45): 30890–30900. doi: 10.1074/jbc.M803416200

PMCID:: PMC2662166

Abstract Article PDF–1.7M

Select item 257512916.

The Complete Genome Sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)

Elizabeth Pierce, Gary Xie, Ravi D. Barabote, Elizabeth Saunders, Cliff S. Han, John C. Detter, Paul Richardson, Thomas S. Brettin, Amaresh Das, Lars G. Ljungdahl, Stephen W. Ragsdale

Environ Microbiol. Author manuscript; available in PMC 2008 Oct 29.

Published in final edited form as: Environ Microbiol. 2008 Oct; 10(10): 2550–2573. Published online 2008 Jun 9. doi: 10.1111/j.1462-2920.2008.01679.x