txid243275[Organism:noexp] - PMC

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Select item 92317111.

Characterization of a Treponema denticola ATCC 35405 mutant strain with mutation accumulation, including a lack of phage-derived genes

Tadaharu Yokogawa, Keiji Nagano, Mari Fujita, Hiroshi Miyakawa, Masahiro Iijima

PLoS One. 2022; 17(6): e0270198. Published online 2022 Jun 24. doi: 10.1371/journal.pone.0270198

PMCID:: PMC9231711

Abstract Article PDF–1.3M

Select item 89001672.

Genistein binding protein targets in dental pathogens

B Vivek Babu, AS Smiline Girija, J Vijayashree Priyadharsini

Bioinformation. 2021; 17(12): 1109–1112. Published online 2021 Dec 31. doi: 10.6026/973206300171109

PMCID:: PMC8900167

Abstract Article PDF–852K

Select item 85734623.

Identification of protein targets in red complex organisms binding with resveratrol

Keshaav Krishnaa Pothapur, Veeraraghavan Vishnu Priya, Gayathri Rengasamy, Vijayashree Priyadharsini Jayaseelan

Bioinformation. 2020; 16(11): 837–842. Published online 2020 Nov 30. doi: 10.6026/97320630016837

PMCID:: PMC8573462

Abstract Article PDF–881K

Select item 85037744.

Protein targets in the red complex organisms binding with an herbal compound silymarin

Nadhirah Faiz, Keshaav Krishnaa Pothapur, V Vishnupriya, R Gayathri, J Vijayashree Priyadharsini

Bioinformation. 2020; 16(10): 759–764. Published online 2020 Oct 31. doi: 10.6026/97320630016759

PMCID:: PMC8503774

Abstract Article PDF–1014K

Select item 76109085.

Prokaryotic viperins produce diverse antiviral molecules

Aude Bernheim, Adi Millman, Gal Ofir, Gilad Meitav, Carmel Avraham, Helena Shomar, Masha M. Rosenberg, Nir Tal, Sarah Melamed, Gil Amitai, Rotem Sorek

Nature. Author manuscript; available in PMC 2021 Jun 4.

Published in final edited form as: Nature. 2021 Jan 1; 589(7840): 120–124. Published online 2020 Sep 16. doi: 10.1038/s41586-020-2762-2

PMCID:: PMC7610908

Abstract Article PDF–5.2M

Select item 73366576.

Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity

C. Titus Brown, Dominik Moritz, Michael P. O’Brien, Felix Reidl, Taylor Reiter, Blair D. Sullivan

Genome Biol. 2020; 21: 164. Published online 2020 Jul 6. doi: 10.1186/s13059-020-02066-4

PMCID:: PMC7336657

Abstract Article PDF–4.2M

Select item 26939577.

Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies

Ursula Pieper, Ranyee Chiang, Jennifer J. Seffernick, Shoshana D. Brown, Margaret E. Glasner, Libusha Kelly, Narayanan Eswar, J. Michael Sauder, Jeffrey B. Bonanno, Subramanyam Swaminathan, Stephen K. Burley, Xiaojing Zheng, Mark R. Chance, Steven C. Almo, John A. Gerlt, Frank M. Raushel, Matthew P. Jacobson, Patricia C. Babbitt, Andrej Sali

J Struct Funct Genomics. 2009 Apr; 10(2): 107–125. Published online 2009 Feb 14. doi: 10.1007/s10969-008-9056-5

PMCID:: PMC2693957

Abstract Article PDF–716K

Select item 18523168.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 12422149.

A computational method to predict genetically encoded rare amino acids in proteins

Barnali N Chaudhuri, Todd O Yeates

Genome Biol. 2005; 6(9): R79. Published online 2005 Aug 31. doi: 10.1186/gb-2005-6-9-r79

PMCID:: PMC1242214

Abstract Article PDF–1.0M

Select item 17349510.

Role of the chymotrypsin-like membrane-associated proteinase from Treponema denticola ATCC 35405 in inactivation of bioactive peptides.

P L Mäkinen, K K Mäkinen, S A Syed

Infect Immun. 1995 Sep; 63(9): 3567–3575. doi: 10.1128/iai.63.9.3567-3575.1995

PMCID:: PMC173495

Summary PDF–292K

Select item 30321011.

An endo-acting proline-specific oligopeptidase from Treponema denticola ATCC 35405: evidence of hydrolysis of human bioactive peptides.

P L Mäkinen, K K Mäkinen, S A Syed

Infect Immun. 1994 Nov; 62(11): 4938–4947. doi: 10.1128/iai.62.11.4938-4947.1994

PMCID:: PMC303210

Summary Page Browse PDF–2.1M

Select item 890016612.

Protein targets in red complex pathogens for catechin

T Cibikkarthik, AS Smiline Girija, J Vijayashree Priyadharsini

Bioinformation. 2021; 17(12): 1105–1108. Published online 2021 Dec 31. doi: 10.6026/973206300171105

PMCID:: PMC8900166

Abstract Article PDF–985K

Select item 834069813.

Identification of aspirin and diclofenac binding proteins in the red complex pathogens

Geethika Babu, Veeraraghavan Vishnu Priya, Pothapur Keshaav Krishnaa, Rengasamy Gayathri, Jayaseelan Vijayashree Priyadharsini

Bioinformation. 2021; 17(1): 192–199. Published online 2021 Jan 31. doi: 10.6026/97320630017192

PMCID:: PMC8340698

Abstract Article PDF–7.2M

Select item 471255214.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9