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Select item 108118311.

LUSTR: a new customizable tool for calling genome-wide germline and somatic short tandem repeat variants

Jinfeng Lu, Camilo Toro, David R. Adams, Undiagnosed Diseases Network, Cristiane Araujo Martins Moreno, Wan-Ping Lee, Yuk Yee Leung, Mathew B. Harms, Badri Vardarajan, Erin L. Heinzen

BMC Genomics. 2024; 25: 115. Published online 2024 Jan 26. doi: 10.1186/s12864-023-09935-9

PMCID:: PMC10811831

Abstract Article PDF–2.1M

Select item 107233572.

An inducible genetic tool for tracking and manipulating specific microglial states in development and disease

Kia M. Barclay, Nora Abduljawad, Zuolin Cheng, Min Woo Kim, Lu Zhou, Jin Yang, Justin Rustenhoven, Jose Mazzitelli Perez, Leon Smyth, Wandy Beatty, JinChao Hou, Naresha Saligrama, Marco Colonna, Guoqiang Yu, Jonathan Kipnis, Qingyun Li

Version 1. bioRxiv. Preprint. 2023 Dec 4. doi: 10.1101/2023.12.01.569597

PMCID:: PMC10723357

Abstract Article PDF–6.5M

Select item 107822583.

TGF‐β1 Inhibits Osteoclast Differentiation and Abnormal Angiogenesis in Intervertebral Disc Degeneration: Evidence from RNA Sequencing and Animal Studies

Keping Wang, Zuolong Wu, Chaoyang Gong, Guanghai Zhao, Haihong Zhang

Orthop Surg. 2024 Jan; 16(1): 167–182. Published online 2023 Nov 28. doi: 10.1111/os.13912

PMCID:: PMC10782258

Abstract Article PDF–3.3M

Select item 106200444.

Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing

Russell J. Butterfield, Diane M. Dunn, Brett Duval, Sarah Moldt, Robert B. Weiss

Genome Res. 2023 Sep; 33(9): 1439–1454. doi: 10.1101/gr.277871.123

PMCID:: PMC10620044

Abstract Article PDF–40M

Select item 103180825.

A biological camera that captures and stores images directly into DNA

Cheng Kai Lim, Jing Wui Yeoh, Aurelius Andrew Kunartama, Wen Shan Yew, Chueh Loo Poh

Nat Commun. 2023; 14: 3921. Published online 2023 Jul 3. doi: 10.1038/s41467-023-38876-w

PMCID:: PMC10318082

Abstract Article PDF–1.8M

Select item 102917536.

A novel tyrosine tRNA-derived fragment, tRF^Tyr, induces oncogenesis and lactate accumulation in LSCC by interacting with LDHA

Rui Zhao, Zhenming Yang, Bo Zhao, Wenjing Li, Yaohui Liu, Xiaoxue Chen, Jing Cao, Jiarui Zhang, Yan Guo, Licheng Xu, Jinpeng Wang, Yanan Sun, Ming Liu, Linli Tian

Cell Mol Biol Lett. 2023; 28: 49. Published online 2023 Jun 26. doi: 10.1186/s11658-023-00463-8

PMCID:: PMC10291753

Abstract Article PDF–4.6M

Select item 102948517.

Novel Gene Rearrangement Pattern in Pachycrepoideus vindemmiae Mitochondrial Genome: New Gene Order in Pteromalidae (Hymenoptera: Chalcidoidea)

Yixin Huang, Yuanhan Yang, Liqing Qi, Haoyuan Hu, Jean-Yves Rasplus, Xu Wang

Animals (Basel) 2023 Jun; 13(12): 1985. Published online 2023 Jun 14. doi: 10.3390/ani13121985

PMCID:: PMC10294851

Abstract Article PDF–5.0M

Select item 102929098.

De Novo Structural Variations of Escherichia coli Detected by Nanopore Long-Read Sequencing

Xia Zhou, Jiao Pan, Yaohai Wang, Michael Lynch, Hongan Long, Yu Zhang

Genome Biol Evol. 2023 Jun; 15(6): evad106. Published online 2023 Jun 9. doi: 10.1093/gbe/evad106

PMCID:: PMC10292909

Abstract Article PDF–642K

Select item 102747889.

The full spectrum of OCT1 (SLC22A1) mutations bridges transporter biophysics to drug pharmacogenomics

Sook Wah Yee, Christian Macdonald, Darko Mitrovic, Xujia Zhou, Megan L. Koleske, Jia Yang, Dina Buitrago Silva, Patrick Rockefeller Grimes, Donovan Trinidad, Swati S. More, Linda Kachuri, John S. Witte, Lucie Delemotte, Kathleen M. Giacomini, Willow Coyote-Maestas

Version 1. bioRxiv. Preprint. 2023 Jun 7. doi: 10.1101/2023.06.06.543963

Published in:: Mol Cell. 2024 May 16; 84(10): 1932–1947.e10.

PMCID:: PMC10274788

Abstract Article PDF–4.6M

Select item 1023291010.

Multiplex PCR-based next generation sequencing as a novel, targeted and accurate molecular approach for periprosthetic joint infection diagnosis

Changyu Huang, Ying Huang, Ziwen Wang, Yiming Lin, Yongbin Li, Yang Chen, Xiaoqing Chen, Chaofan Zhang, Wenbo Li, Wenming Zhang, Xinyu Fang, Zida Huang

Front Microbiol. 2023; 14: 1181348. Published online 2023 May 18. doi: 10.3389/fmicb.2023.1181348

PMCID:: PMC10232910

Abstract Article PDF–896K

Select item 995152611.

DIMPLE: deep insertion, deletion, and missense mutation libraries for exploring protein variation in evolution, disease, and biology

Christian B. Macdonald, David Nedrud, Patrick Rockefeller Grimes, Donovan Trinidad, James S. Fraser, Willow Coyote-Maestas

Genome Biol. 2023; 24: 36. Published online 2023 Feb 24. doi: 10.1186/s13059-023-02880-6

PMCID:: PMC9951526

Abstract Article PDF–2.5M

Select item 997509012.

Humoral signatures of MOG-antibody-associated disease track with age and disease activity

Marianna Spatola, Omar Chuquisana, Wonyeong Jung, Joseph A. Lopez, Eva-Maria Wendel, Sudarshini Ramanathan, Christian W. Keller, Tim Hahn, Edgar Meinl, Markus Reindl, Russell C. Dale, Heinz Wiendl, Douglas A. Lauffenburger, Kevin Rostásy, Fabienne Brilot, Galit Alter, Jan D. Lünemann

Cell Rep Med. 2023 Feb 21; 4(2): 100913. Published online 2023 Jan 19. doi: 10.1016/j.xcrm.2022.100913

PMCID:: PMC9975090

Abstract Article PDF–2.5M

Select item 972622013.

I-LIFT (image-based laser-induced forward transfer) platform for manipulating encoded microparticles

Sumin Lee, Wooseok Lee, Amos Chungwon Lee, Juhong Nam, JinYoung Lee, Hamin Kim, Yunjin Jeong, Huiran Yeom, Namphil Kim, Seo Woo Song, Sunghoon Kwon

Biomicrofluidics. 2022 Dec; 16(6): 061101. Published online 2022 Dec 5. doi: 10.1063/5.0131733

PMCID:: PMC9726220

Abstract Article PDF–1.3M

Select item 974864414.

Altered genome‑wide hydroxymethylation analysis for neoadjuvant chemoradiotherapy followed by surgery in esophageal cancer

Xianjing Zhang, Mingzhu Lu, Jing Zhu, Changsong Zhang, Meihua Wang

Exp Ther Med. 2023 Jan; 25(1): 29. Published online 2022 Nov 24. doi: 10.3892/etm.2022.11728

PMCID:: PMC9748644

Abstract Article PDF–12M

Select item 969662415.

Transcriptome Analysis of Human Glioblastoma Cells Susceptible to Infection with the Leningrad-16 Vaccine Strain of Measles Virus

Yulia Ammour, Olga Susova, George Krasnov, Eugenia Nikolaeva, Vyacheslav Varachev, Yulia Schetinina, Marina Gavrilova, Alexey Mitrofanov, Anna Poletaeva, Ali Bekyashev, Evgeny Faizuloev, Vitaly V. Zverev, Oxana A. Svitich, Tatiana V. Nasedkina

Viruses. 2022 Nov; 14(11): 2433. Published online 2022 Nov 2. doi: 10.3390/v14112433

PMCID:: PMC9696624

Abstract Article PDF–12M

Select item 960230016.

Identification and Application of Two Promising Peptide Ligands for the Immunodetection of Imidacloprid Residue

Tianyang You, Yuan Ding, Yue Huang, Yang Lu, Minghua Wang, Xiude Hua

Foods. 2022 Oct; 11(20): 3163. Published online 2022 Oct 11. doi: 10.3390/foods11203163

PMCID:: PMC9602300

Abstract Article PDF–2.3M

Select item 949641817.

Gut Microbiota and Coronary Plaque Characteristics

Akihiro Nakajima, Satoru Mitomo, Haruhito Yuki, Makoto Araki, Lena Marie Seegers, Iris McNulty, Hang Lee, David Kuter, Midori Ishibashi, Kazuna Kobayashi, Jouke Dijkstra, Hirokazu Onishi, Hiroto Yabushita, Satoshi Matsuoka, Hiroyoshi Kawamoto, Yusuke Watanabe, Kentaro Tanaka, Shengpu Chou, Toru Naganuma, Masaaki Okutsu, Satoko Tahara, Naoyuki Kurita, Shotaro Nakamura, Suman Das, Sunao Nakamura, Ik‐Kyung Jang

J Am Heart Assoc. 2022 Sep 6; 11(17): e026036. Published online 2022 Aug 24. doi: 10.1161/JAHA.122.026036

PMCID:: PMC9496418

Abstract Article PDF–4.6M

Select item 939146118.

METTL3 promotes prostatic hyperplasia by regulating PTEN expression in an m⁶A-YTHDF2-dependent manner

Jiaren Li, Hanyu Yao, Jin Huang, Chao Li, Yichuan Zhang, Ran Xu, Zhenting Wang, Zhi Long, Jin Tang, Long Wang

Cell Death Dis. 2022 Aug; 13(8): 723. Published online 2022 Aug 19. doi: 10.1038/s41419-022-05162-4

PMCID:: PMC9391461

Abstract Article PDF–5.9M

Select item 935575819.

Exploring the Correlation between Changes in Gut Microbial Community Diversity and Depression in Human Populations

Xin Li, Ke Jing, Hong Lu, Ke Li, Yaowu Zhang, Hasichaolu

Biomed Res Int. 2022; 2022: 6334868. Published online 2022 Jul 29. doi: 10.1155/2022/6334868

PMCID:: PMC9355758

Abstract Article PDF–2.6M

Select item 932733820.

Dynamic transcriptome analysis of NFAT family in guided bone regeneration with occlusive periosteum in swine model

Bao-Fu Yu, Ning Yin, Zi Wang, Xiao-Xue Chen, Chuan-Chang Dai, Jiao Wei

J Orthop Surg Res. 2022; 17: 364. Published online 2022 Jul 26. doi: 10.1186/s13018-022-03252-9

PMCID:: PMC9327338

Abstract Article PDF–2.1M

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