Skip to main content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Volume 23;  2024

Brief Reports

Prevalence estimation of Tropheryma whipplei in duodenal biopsy tissues of Koreans
Sumi Yoon, Min Eui Hong, Soon Auck Hong, Tae-Hyoung Kim, Mi-Kyung Lee
Ann Clin Microbiol Antimicrob. 2024; 23: 2. Published online 2024 Jan 3. doi: 10.1186/s12941-023-00658-z
PMCID:
PMC10765791
Article PDF–893K
Molecular epidemiological characteristics of osteoarthritis-associated Brucella melitensis in China: evidence from whole-genome sequencing-based analysis
Lei Zhu, Chi Zhang, Chen Liang, Li Peng, Huanyu Yan, Xiuwen Liang, Youjia Xu
Ann Clin Microbiol Antimicrob. 2024; 23: 18. Published online 2024 Feb 24. doi: 10.1186/s12941-024-00671-w
PMCID:
PMC10893595
Article PDF–1.0M
Characterization of resistance genes and replicon typing in Carbapenem-resistant Klebsiella pneumoniae strains
Esin Karaman, Ayşegül Çopur Çiçek, Vicdan Şemen, Fatih Şaban Beriş
Ann Clin Microbiol Antimicrob. 2024; 23: 19. Published online 2024 Feb 24. doi: 10.1186/s12941-024-00672-9
PMCID:
PMC10893597
Article PDF–1.4M

Case Report

Chromobacterium sp. septicemia in Sweden. A clinical case report
Oscar Backrud, Erik Engberg, Kristina Nyberg, Peter Wieslander, Edward R. B. Moore
Ann Clin Microbiol Antimicrob. 2024; 23: 34. Published online 2024 Apr 18. doi: 10.1186/s12941-024-00692-5
PMCID:
PMC11027382
Article PDF–1.0M

Reviews

Clinical characteristics and drug resistance of Nocardia in Henan, China, 2017–2023
Yungang Han, Meijin Cheng, Zheng Li, Huihui Chen, Shuang Xia, Yue Zhao, Yali Wang, Wenyi He, Wei Wang
Ann Clin Microbiol Antimicrob. 2024; 23: 23. Published online 2024 Mar 6. doi: 10.1186/s12941-024-00677-4
PMCID:
PMC10919010
Article PDF–1.2M
Global mapping of antibiotic resistance rates among clinical isolates of Stenotrophomonas maltophilia: a systematic review and meta-analysis
Narjess Bostanghadiri, Mohammad Sholeh, Tahereh Navidifar, Leila Dadgar-Zankbar, Zahra Elahi, Alex van Belkum, Davood Darban-Sarokhalil
Ann Clin Microbiol Antimicrob. 2024; 23: 26. Published online 2024 Mar 19. doi: 10.1186/s12941-024-00685-4
PMCID:
PMC10953290
Article PDF–5.4M

Research

Changes in tuberculosis risk after transplantation in the setting of decreased community tuberculosis incidence: a national population-based study, 2008–2020
JongHoon Hyun, Myeongjee Lee, Inkyung Jung, Eunhwa Kim, Seung Min Hahn, Yu Ri Kim, Sungmin Lim, Kyong Ihn, Min Young Kim, Jong Gyun Ahn, Joon-Sup Yeom, Su Jin Jeong, Ji-Man Kang
Ann Clin Microbiol Antimicrob. 2024; 23: 1. Published online 2024 Jan 3. doi: 10.1186/s12941-023-00661-4
PMCID:
PMC10765802
Article PDF–2.2M
The role of rapid syndromic diagnostic testing of gastrointestinal pathogens as a clinical decision support tool in a pediatric emergency department
Hyun Mi Kang, In Hyuk Yoo, Dae Chul Jeong
Ann Clin Microbiol Antimicrob. 2024; 23: 3. Published online 2024 Jan 5. doi: 10.1186/s12941-023-00662-3
PMCID:
PMC10770992
Article PDF–2.0M
Impact of Helicobacter pylori colonization density and depth on gastritis severity
Jianxiang Peng, Jinliang Xie, Dingwei Liu, Kaijie Yang, Shuang Wu, Dongsheng Liu, Deqiang Huang, Yong Xie
Ann Clin Microbiol Antimicrob. 2024; 23: 4. Published online 2024 Jan 12. doi: 10.1186/s12941-024-00666-7
PMCID:
PMC10785438
Article PDF–1.1M
Genomic diversity of β-lactamase producing Pseudomonas aeruginosa in Iran; the impact of global high-risk clones
Nazila Ahmadi, Himen Salimizand, Abolfazl Rafati Zomorodi, Jalileh Ebn Abbas, Rashid Ramazanzadeh, Fakhri Haghi, Sepideh Hassanzadeh, Mojdeh Jahantigh, Mojtaba Shahin
Ann Clin Microbiol Antimicrob. 2024; 23: 5. Published online 2024 Jan 13. doi: 10.1186/s12941-024-00668-5
PMCID:
PMC10790247
Article PDF–1.0M
Molecular characterization of extended-spectrum β-lactamase-producing Escherichia coli isolated from lower respiratory tract samples between 2002 and 2019 in the Central Slovenia region
Katja Hrovat, Katja Molan, Katja Seme, Jerneja Ambrožič Avguštin
Ann Clin Microbiol Antimicrob. 2024; 23: 6. Published online 2024 Jan 13. doi: 10.1186/s12941-023-00664-1
PMCID:
PMC10790261
Article PDF–1.8M
Combination antimicrobial therapy: in vitro synergistic effect of anti-staphylococcal drug oxacillin with antimicrobial peptide nisin against Staphylococcus epidermidis clinical isolates and Staphylococcus aureus biofilms
Toktam Sharafi, Ezzat Allah Ghaemi, Maryam Rafiee, Abdollah Ardebili
Ann Clin Microbiol Antimicrob. 2024; 23: 7. Published online 2024 Jan 20. doi: 10.1186/s12941-024-00667-6
PMCID:
PMC10800071
Article PDF–2.0M
Pulmonary co-infections by Pneumocystis jirovecii and Herpesviridae: a seven-year retrospective study
Alan Rucar, Anne Totet, Yohann Le Govic, Baptiste Demey, Céline Damiani
Ann Clin Microbiol Antimicrob. 2024; 23: 8. Published online 2024 Jan 20. doi: 10.1186/s12941-023-00663-2
PMCID:
PMC10800065
Article PDF–1.5M
Dissemination of mcr-1 and β-lactamase genes among Pseudomonas aeruginosa: molecular characterization of MDR strains in broiler chicks and dead-in-shell chicks infections
Mona Salem, Gamal Younis, Asmaa Sadat, Nehal Ahmed Talaat Nouh, Dalal Nasser Binjawhar, Mohamed M. Abdel-Daim, Mohamed Elbadawy, Amal Awad
Ann Clin Microbiol Antimicrob. 2024; 23: 9. Published online 2024 Jan 28. doi: 10.1186/s12941-024-00669-4
PMCID:
PMC10823725
Article PDF–2.1M
Diagnostic strategy of metagenomic next-generation sequencing for gram negative bacteria in respiratory infections
Wenyan Liang, Qun Zhang, Qian Qian, Mingyue Wang, Yuchen Ding, Ji Zhou, Yi Zhu, Yu Jin, Xuesong Chen, Hui Kong, Wei Song, Xin Lu, Xiaodong Wu, Xiaoyong Xu, Shanling Dai, Wenkui Sun
Ann Clin Microbiol Antimicrob. 2024; 23: 10. Published online 2024 Feb 1. doi: 10.1186/s12941-024-00670-x
PMCID:
PMC10835912
Article PDF–1.8M
Integrated approach for detection of SARS-CoV-2 and its variant by utilizing LAMP and ARMS-PCR
Maryam Nawab, Syeda Kiran Riaz, Eiman Ismail, Alfar Ahamed, Aaysha Tariq, Muhammad Faraz Arshad Malik, Naeem F. Qusty, Farkad Bantun, Petr Slama, Massab Umair, Shafiul Haque, D. Katterine Bonilla-Aldana, Alfonso J. Rodriguez-Morales
Ann Clin Microbiol Antimicrob. 2024; 23: 11. Published online 2024 Feb 1. doi: 10.1186/s12941-023-00665-0
PMCID:
PMC10836012
Article PDF–1.4M
Antimicrobial resistance survey and whole-genome analysis of nosocomial P. Aeruginosa isolated from eastern Province of China in 2016–2021
Zimeng Hu, Lu Zhou, Xingyu Tao, Pei Li, Xiangkuan Zheng, Wei Zhang, Zhongming Tan
Ann Clin Microbiol Antimicrob. 2024; 23: 12. Published online 2024 Feb 9. doi: 10.1186/s12941-023-00656-1
PMCID:
PMC10858563
Article PDF–3.9M
Molecular characterization of extensively drug-resistant hypervirulent Pseudomonas aeruginosa isolates in China
Jun Li, Mengli Tang, Zhaojun Liu, Yuhan Wei, Fengjun Xia, Yubing Xia, Yongmei Hu, Haichen Wang, Mingxiang Zou
Ann Clin Microbiol Antimicrob. 2024; 23: 13. Published online 2024 Feb 12. doi: 10.1186/s12941-024-00674-7
PMCID:
PMC10863134
Article PDF–4.1M
Co-transfer of IncFII/IncFIB and IncFII plasmids mediated by IS26 facilitates the transmission of mcr-8.1 and tmexCD1-toprJ1
Qian Wang, Meng Zhang, Yue Liu, Jinmei Li, Ran Chen, Yueling Wang, Yan Jin, Yuanyuan Bai, Zhen Song, Xinglun Lu, Changyin Wang, Yingying Hao
Ann Clin Microbiol Antimicrob. 2024; 23: 14. Published online 2024 Feb 13. doi: 10.1186/s12941-024-00676-5
PMCID:
PMC10865577
Article PDF–7.1M
Epidemiology and outcomes of multidrug-resistant bacterial infection in non-cystic fibrosis bronchiectasis
Chih-Hao Chang, Chiung-Hsin Chang, Shih-Hao Huang, Chung-Shu Lee, Po-Chuan Ko, Chun-Yu Lin, Meng-Heng Hsieh, Yu-Tung Huang, Horng-Chyuan Lin, Li-Fu Li, Fu-Tsai Chung, Chun-Hua Wang, Hung-Yu Huang
Ann Clin Microbiol Antimicrob. 2024; 23: 15. Published online 2024 Feb 13. doi: 10.1186/s12941-024-00675-6
PMCID:
PMC10865664
Article PDF–1.5M
Application of the Weighted-Incidence Syndromic Combination Antibiogram (WISCA) to guide the empiric antibiotic treatment of febrile neutropenia in oncological paediatric patients: experience from two paediatric hospitals in Northern Italy
Cecilia Liberati, Daniele Donà, Linda Maestri, Maria Grazia Petris, Elisa Barbieri, Elisa Gallo, Jacopo Gallocchio, Marta Pierobon, Elisabetta Calore, Annachiara Zin, Giulia Brigadoi, Marcello Mariani, Alessio Mesini, Carolina Saffioti, Elisabetta Ugolotti, Dario Gregori, Carlo Giaquinto, Elio Castagnola, Alessandra Biffi
Ann Clin Microbiol Antimicrob. 2024; 23: 16. Published online 2024 Feb 15. doi: 10.1186/s12941-024-00673-8
PMCID:
PMC10870518
Article PDF–1.5M
Genomic characterization, in vitro, and preclinical evaluation of two microencapsulated lytic phages VB_ST_E15 and VB_ST_SPNIS2 against clinical multidrug-resistant Salmonella serovars
Reem A. Youssef, Masarra M. Sakr, Rania I. Shebl, Bishoy T. Saad, Khaled M. Aboshanab
Ann Clin Microbiol Antimicrob. 2024; 23: 17. Published online 2024 Feb 15. doi: 10.1186/s12941-024-00678-3
PMCID:
PMC10870556
Article PDF–8.0M
Correlation between antimicrobial resistance, biofilm formation, and virulence determinants in uropathogenic Escherichia coli from Egyptian hospital
Sara A. Alshaikh, Tarek El-banna, Fatma Sonbol, Mahmoud H. Farghali
Ann Clin Microbiol Antimicrob. 2024; 23: 20. Published online 2024 Feb 24. doi: 10.1186/s12941-024-00679-2
PMCID:
PMC10894499
Article PDF–3.5M
Aetiology and use of antibiotics in pregnancy-related infections: results of the WHO Global Maternal Sepsis Study (GLOSS), 1-week inception cohort
Carolina C. Ribeiro-do-Valle, Mercedes Bonet, Vanessa Brizuela, Edgardo Abalos, Adama Baguiya, Fernando Bellissimo-Rodrigues, Mihaela Budianu, Lucian Puscasiu, Marian Knight, David Lissauer, Catherine Dunlop, Shevin T. Jacob, Sadia Shakoor, Luis Gadama, Bouchra Assarag, João Paulo Souza, Jose G. Cecatti, the WHO GLOSS research group
Ann Clin Microbiol Antimicrob. 2024; 23: 21. Published online 2024 Feb 24. doi: 10.1186/s12941-024-00681-8
PMCID:
PMC10894467
Article PDF–1.2M
Nanopore targeted sequencing-based diagnosis of central nervous system infections in HIV-infected patients
Xihong Yang, Shuilian Zhou, Ziwei Chang, Xiaotong Xi, Jiahui Li, Mengjiao Miao, Yaling Chen, Wei Chen, Hongying Zhang, Ran Ding, Zhiliang Hu
Ann Clin Microbiol Antimicrob. 2024; 23: 22. Published online 2024 Feb 29. doi: 10.1186/s12941-024-00682-7
PMCID:
PMC10905896
Article PDF–1.7M
Coexistence of blaIMP−4 and blaSFO−1 in an IncHI5B plasmid harbored by tigecycline-non-susceptible Klebsiella variicola strain
Hui Chen, Hao Xu, Ruishan Liu, Jian Shen, Beiwen Zheng, Lanjuan Li
Ann Clin Microbiol Antimicrob. 2024; 23: 24. Published online 2024 Mar 6. doi: 10.1186/s12941-024-00680-9
PMCID:
PMC10918965
Article PDF–4.1M
Bigger problems from smaller colonies: emergence of antibiotic-tolerant small colony variants of Mycobacterium avium complex in MAC-pulmonary disease patients
Hyun-Eui Park, Kyu-Min Kim, Minh Phuong Trinh, Jung-Wan Yoo, Sung Jae Shin, Min-Kyoung Shin
Ann Clin Microbiol Antimicrob. 2024; 23: 25. Published online 2024 Mar 18. doi: 10.1186/s12941-024-00683-6
PMCID:
PMC10949641
Article PDF–5.6M
Genomic insights into the evolution and mechanisms of carbapenem-resistant hypervirulent Klebsiella pneumoniae co-harboring blaKPC and blaNDM: implications for public health threat mitigation
Qian Wang, Yue Liu, Ran Chen, Meng Zhang, Zaifeng Si, Yueling Wang, Yan Jin, Yuanyuan Bai, Zhen Song, Xinglun Lu, Mingju Hao, Yingying Hao
Ann Clin Microbiol Antimicrob. 2024; 23: 27. Published online 2024 Mar 29. doi: 10.1186/s12941-024-00686-3
PMCID:
PMC10981300
Article PDF–4.5M
An isothermal CRISPR- based lateral flow assay for detection of Neisseria meningitidis
Dao Thi Huyen, Julien Reboud, Dao Thanh Quyen, Jonathan M. Cooper, Thirumalaisamy P. Velavan, Ngo Tat Trung, Le Huu Song
Ann Clin Microbiol Antimicrob. 2024; 23: 28. Published online 2024 Mar 30. doi: 10.1186/s12941-024-00688-1
PMCID:
PMC10981803
Article PDF–2.9M
Development of a multiplex droplet digital PCR method for detection and monitoring of Mycobacterium tuberculosis and drug-resistant tuberculosis
Yu Jeong Choi, Yoonjung Kim, Hye Jung Park, Dokyun Kim, Hyukmin Lee, Young Ah Kim, Kyung-A Lee
Ann Clin Microbiol Antimicrob. 2024; 23: 29. Published online 2024 Apr 5. doi: 10.1186/s12941-024-00687-2
PMCID:
PMC10998390
Article PDF–1.1M
Development of a novel sequence based real-time PCR assay for specific and sensitive detection of Burkholderia pseudomallei in clinical and environmental matrices
Pranjal Kumar Yadav, Suchetna Singh, Moumita Paul, Sanjay Kumar, S. Ponmariappan, Duraipandian Thavaselvam
Ann Clin Microbiol Antimicrob. 2024; 23: 30. Published online 2024 Apr 10. doi: 10.1186/s12941-024-00693-4
PMCID:
PMC11007888
Article PDF–2.7M
Quenching of quorum sensing in multi-drug resistant Pseudomonas aeruginosa: insights on halo-bacterial metabolites and gamma irradiation as channels inhibitors
Reham Talaat, Mohamed N. Abu El-naga, Heba Abd Alla El-Bialy, Mohie Z. El-Fouly, Mohamed A. Abouzeid
Ann Clin Microbiol Antimicrob. 2024; 23: 31. Published online 2024 Apr 10. doi: 10.1186/s12941-024-00684-5
PMCID:
PMC11007959
Article PDF–1.5M
Clinical manifestations, antimicrobial resistance and genomic feature analysis of multidrug-resistant Elizabethkingia strains
Chongyang Wu, Li Xiong, Quanfeng Liao, Weili Zhang, Yuling Xiao, Yi Xie
Ann Clin Microbiol Antimicrob. 2024; 23: 32. Published online 2024 Apr 10. doi: 10.1186/s12941-024-00691-6
PMCID:
PMC11007976
Article PDF–1.8M
Antimicrobial resistance prediction by clinical metagenomics in pediatric severe pneumonia patients
Mingyu Gan, Yanyan Zhang, Gangfeng Yan, Yixue Wang, Guoping Lu, Bingbing Wu, Weiming Chen, Wenhao Zhou
Ann Clin Microbiol Antimicrob. 2024; 23: 33. Published online 2024 Apr 15. doi: 10.1186/s12941-024-00690-7
PMCID:
PMC11020437
Article PDF–3.3M
Articles from Annals of Clinical Microbiology and Antimicrobials are provided here courtesy of BMC