Volume 15(4); 2024 Apr 1

Articles

Optical coherence tomography for multicellular tumor spheroid category recognition and drug screening classification via multi-spatial-superficial-parameter and machine learning

Feng Yan, Bornface Mutembei, Trisha Valerio, Gokhan Gunay, Ji-Hee Ha, Qinghao Zhang, Chen Wang, Ebenezer Raj Selvaraj Mercyshalinie, Zaid A. Alhajeri, Fan Zhang, Lauren E. Dockery, Xinwei Li, Ronghao Liu, Danny N. Dhanasekaran, Handan Acar, Wei R. Chen, Qinggong Tang

Biomed Opt Express. 2024 Apr 1; 15(4): 2014–2047. Published online 2024 Mar 4. doi: 10.1364/BOE.514079

PMCID:: PMC11019711

Article PDF–8.8M

Analog multiplexing of a laser clock and computational photon counting for fast fluorescence lifetime imaging microscopy

Rishyashring R. Iyer, Janet E. Sorrells, Kevin K. D. Tan, Lingxiao Yang, Geng Wang, Haohua Tu, Stephen A. Boppart

Biomed Opt Express. 2024 Apr 1; 15(4): 2048–2062. Published online 2024 Mar 4. doi: 10.1364/BOE.514813

PMCID:: PMC11019682

Article PDF–6.3M

Siamese deep learning video flow cytometry for automatic and label-free clinical cervical cancer cell analysis

Chao Liu, Zeng Yuan, Qiao Liu, Kun Song, Beihua Kong, Xuantao Su

Biomed Opt Express. 2024 Apr 1; 15(4): 2063–2077. Published online 2024 Mar 4. doi: 10.1364/BOE.510022

PMCID:: PMC11019674

Article PDF–6.2M

Performance enhancement of diffuse fluorescence tomography based on an extended Kalman filtering-long short term memory neural network correction model

Lingxiu Xing, Limin Zhang, Wenjing Sun, Zhuanxia He, Yanqi Zhang, Feng Gao

Biomed Opt Express. 2024 Apr 1; 15(4): 2078–2093. Published online 2024 Mar 4. doi: 10.1364/BOE.514041

PMCID:: PMC11019700

Article PDF–6.0M

Multicolor two-photon light-patterning microscope exploiting the spatio-temporal properties of a fiber bundle

Antonio Lorca-Cámara, Christophe Tourain, Vincent de Sars, Valentina Emiliani, Nicolò Accanto

Biomed Opt Express. 2024 Apr 1; 15(4): 2094–2109. Published online 2024 Mar 4. doi: 10.1364/BOE.507690

PMCID:: PMC11019707

Article PDF–8.4M

Introduction to the Optics and the Brain 2023 feature issue

Adam Q. Bauer, Emily A. Gibson, Hui Wang, Vivek J. Srinivasan

Biomed Opt Express. 2024 Apr 1; 15(4): 2110–2113. Published online 2024 Mar 4. doi: 10.1364/BOE.517678

PMCID:: PMC11019680

Article PDF–2.3M

Dual modality intravascular catheter system combining pulse-sampling fluorescence lifetime imaging and polarization-sensitive optical coherence tomography

Julien Bec, Xiangnan Zhou, Martin Villiger, Jeffrey A. Southard, Brett Bouma, Laura Marcu

Biomed Opt Express. 2024 Apr 1; 15(4): 2114–2132. Published online 2024 Mar 5. doi: 10.1364/BOE.516515

PMCID:: PMC11019710

Article PDF–20M

Fair non-contact blood pressure estimation using imaging photoplethysmography

Hongli Fang, Jiping Xiong, Linying He

Biomed Opt Express. 2024 Apr 1; 15(4): 2133–2151. Published online 2024 Mar 5. doi: 10.1364/BOE.514241

PMCID:: PMC11019696

Article PDF–45M

Interferometric near-infrared spectroscopy (iNIRS) reveals that blood flow index depends on wavelength

Dibbyan Mazumder, Oybek Kholiqov, Vivek J. Srinivasan

Biomed Opt Express. 2024 Apr 1; 15(4): 2152–2174. Published online 2024 Mar 6. doi: 10.1364/BOE.507373

PMCID:: PMC11019706

Article PDF–4.8M

Implicit neural representations in light microscopy

Sophie Louise Hauser, Johanna Brosig, Bhargavi Murthy, Alessio Attardo, Andreas M. Kist

Biomed Opt Express. 2024 Apr 1; 15(4): 2175–2186. Published online 2024 Mar 6. doi: 10.1364/BOE.515517

PMCID:: PMC11019677

Article PDF–7.3M

Deep learning-assisted low-cost autofluorescence microscopy for rapid slide-free imaging with virtual histological staining

Ivy H. M. Wong, Zhenghui Chen, Lulin Shi, Claudia T. K. Lo, Lei Kang, Weixing Dai, Terence T. W. Wong

Biomed Opt Express. 2024 Apr 1; 15(4): 2187–2201. Published online 2024 Mar 6. doi: 10.1364/BOE.515018

PMCID:: PMC11019672

Article PDF–5.3M

All-optical dual module platform for motility-based functional scrutiny of microencapsulated probiotic bacteria

Zhe Wang, Giusy Giugliano, Jaromir Behal, Michela Schiavo, Pasquale Memmolo, Lisa Miccio, Simonetta Grilli, Filomena Nazzaro, Pietro Ferraro, Vittorio Bianco

Biomed Opt Express. 2024 Apr 1; 15(4): 2202–2223. Published online 2024 Mar 6. doi: 10.1364/BOE.510543

PMCID:: PMC11019698

Article PDF–5.3M

Low-cost 3D printed lenses for brightfield and fluorescence microscopy

Jay Christopher, Liam M. Rooney, Mark Donnachie, Deepak Uttamchandani, Gail McConnell, Ralf Bauer

Biomed Opt Express. 2024 Apr 1; 15(4): 2224–2237. Published online 2024 Mar 7. doi: 10.1364/BOE.514653

PMCID:: PMC11019669

Article PDF–6.2M

Dynamic model for the strain-modulated spectral reflectance of the human skin in vivo

Zongze Huo, Shibin Wang, Huixin Wei, Xuanshi Cheng, Linan Li, Chuanwei Li, Zhiyong Wang

Biomed Opt Express. 2024 Apr 1; 15(4): 2238–2250. Published online 2024 Mar 7. doi: 10.1364/BOE.507361

PMCID:: PMC11019687

Article PDF–3.8M

In-vivo assessment of a rat rectal tumor using optical-resolution photoacoustic endoscopy

Riqiang Lin, Shengmiao Lv, Wenjing Lou, Xiatian Wang, Zhihua Xie, Silue Zeng, Rui Chen, Wen Gao, Tianan Jiang, Ka-Wai Eric Cheng, Kwok-Ho Lam, Xiaojing Gong

Biomed Opt Express. 2024 Apr 1; 15(4): 2251–2261. Published online 2024 Mar 8. doi: 10.1364/BOE.518204

PMCID:: PMC11019702

Article PDF–5.1M

Employing texture loss to denoise OCT images using generative adversarial networks

Maryam Mehdizadeh, Sajib Saha, David Alonso-Caneiro, Jason Kugelman, Cara MacNish, Fred Chen

Biomed Opt Express. 2024 Apr 1; 15(4): 2262–2280. Published online 2024 Mar 11. doi: 10.1364/BOE.503868

PMCID:: PMC11019688

Article PDF–5.7M

Fast volumetric multifocus structured illumination microscopy of subcellular dynamics in living cells

Maximilian Lukas Senftleben, Antone Bajor, Eduardo Hirata, Sara Abrahamsson, Hjalmar Brismar

Biomed Opt Express. 2024 Apr 1; 15(4): 2281–2292. Published online 2024 Mar 11. doi: 10.1364/BOE.516261

PMCID:: PMC11019691

Article PDF–7.6M

Plasmonic nano-bowls for monitoring intra-membrane changes in liposomes, and DNA-based nanocarriers in suspension

Sathi Das, Jean-Claude Tinguely, Sybil Akua Okyerewa Obuobi, Nataša Škalko-Basnet, Kanchan Saxena, Balpreet Singh Ahluwalia, Dalip Singh Mehta

Biomed Opt Express. 2024 Apr 1; 15(4): 2293–2307. Published online 2024 Mar 12. doi: 10.1364/BOE.517471

PMCID:: PMC11019686

Article PDF–5.4M

Tissue mimicking materials and finger phantom design for pulse oximetry

Andres J. Rodriguez, Sandhya Vasudevan, Masoud Farahmand, Sandy Weininger, William C. Vogt, Christopher G. Scully, Jessica Ramella-Roman, T. Joshua Pfefer

Biomed Opt Express. 2024 Apr 1; 15(4): 2308–2327. Published online 2024 Mar 12. doi: 10.1364/BOE.518967

PMCID:: PMC11019708

Article PDF–6.4M

Terahertz polarimetric imaging of biological tissue: Monte Carlo modeling of signal contrast mechanisms due to Mie scattering

Kuangyi Xu, M. Hassan Arbab

Biomed Opt Express. 2024 Apr 1; 15(4): 2328–2342. Published online 2024 Mar 13. doi: 10.1364/BOE.515623

PMCID:: PMC11019684

Article PDF–4.1M

Brain tumor grading diagnosis using transfer learning based on optical coherence tomography

Sanford P. C. Hsu, Miao-Hui Lin, Chun-Fu Lin, Tien-Yu Hsiao, Yi-Min Wang, Chia-Wei Sun

Biomed Opt Express. 2024 Apr 1; 15(4): 2343–2357. Published online 2024 Mar 13. doi: 10.1364/BOE.513877

PMCID:: PMC11019689

Article PDF–5.8M

User-friendly oblique plane microscopy on a fully functional commercially available microscope base

George Sirinakis, Edward S. Allgeyer, Dmitry Nashchekin, Daniel St. Johnston

Biomed Opt Express. 2024 Apr 1; 15(4): 2358–2376. Published online 2024 Mar 14. doi: 10.1364/BOE.518856

PMCID:: PMC11019673

Article PDF–9.3M

Miniature, multi-dichroic instrument for measuring the concentration of multiple fluorophores

Konstantin Grygoryev, Huihui Lu, Simon Sørensen, Omid Talebi Varnosfaderani, Rachel Georgel, Liyao Li, Ray Burke, Stefan Andersson-Engels

Biomed Opt Express. 2024 Apr 1; 15(4): 2377–2391. Published online 2024 Mar 14. doi: 10.1364/BOE.516574

PMCID:: PMC11019676

Article PDF–6.5M

Single-fiber probes for combined sensing and imaging in biological tissue: recent developments and prospects

Jiawen Li, Stephen C. Warren-Smith, Robert A. McLaughlin, Heike Ebendorff-Heidepriem

Biomed Opt Express. 2024 Apr 1; 15(4): 2392–2405. Published online 2024 Mar 15. doi: 10.1364/BOE.517920

PMCID:: PMC11019705

Article PDF–4.0M

Multi-function sensing applications based on high Q-factor multi-Fano resonances in an all-dielectric metastructure

Shuangshuang Cao, Xinye Fan, Wenjing Fang, Mengcheng Du, Qinghe Sun, Huijuan Niu, Chuanchuan Li, Xin Wei, Chenglin Bai, Jifang Tao, Mingxin Li, Baoxi Chen, Santosh Kumar

Biomed Opt Express. 2024 Apr 1; 15(4): 2406–2418. Published online 2024 Mar 15. doi: 10.1364/BOE.518910

PMCID:: PMC11019704

Article PDF–7.0M

High spatiotemporal mapping of cortical blood flow velocity with an enhanced accuracy

Tian Jin, Baochen Li, Linyang Li, Weizhi Qi, Lei Xi

Biomed Opt Express. 2024 Apr 1; 15(4): 2419–2432. Published online 2024 Mar 15. doi: 10.1364/BOE.520886

PMCID:: PMC11019678

Article PDF–5.2M

Preserving shape details of pulse signals for video-based blood pressure estimation

Xuesong Han, Xuezhi Yang, Shuai Fang, Yawei Chen, Qin Chen, Longwei Li, RenCheng Song

Biomed Opt Express. 2024 Apr 1; 15(4): 2433–2450. Published online 2024 Mar 15. doi: 10.1364/BOE.516388

PMCID:: PMC11019694

Article PDF–7.5M

Imaging the intracellular refractive index distribution (IRID) for dynamic label-free living colon cancer cells via circularly depolarization decay model (CDDM)

Huijun Wang, Lu Zhang, Jie Huang, Zewen Yang, Chen Fan, Li Yuan, Hong Zhao, Zhenxi Zhang, Xiaolong Liu

Biomed Opt Express. 2024 Apr 1; 15(4): 2451–2465. Published online 2024 Mar 15. doi: 10.1364/BOE.518957

PMCID:: PMC11019712

Article PDF–5.7M

Three-dimensional particle streak velocimetry based on optical coherence tomography for assessing preimplantation embryo movement in mouse oviduct in vivo

Tianqi Fang, Huan Han, Jingyu Sun, Aleese Mukhamedjanova, Shang Wang

Biomed Opt Express. 2024 Apr 1; 15(4): 2466–2480. Published online 2024 Mar 18. doi: 10.1364/BOE.519595

PMCID:: PMC11019685

Article PDF–6.2M

Optical signatures of thermal damage on ex-vivo brain, lung and heart tissues using time-domain diffuse optical spectroscopy

Alessandro Bossi, Leonardo Bianchi, Paola Saccomandi, Antonio Pifferi

Biomed Opt Express. 2024 Apr 1; 15(4): 2481–2497. Published online 2024 Mar 19. doi: 10.1364/BOE.517376

PMCID:: PMC11019675

Article PDF–9.4M

Deep learning-based vessel extraction in 3D confocal microscope images of cleared human glioma tissues

Xiaodu Yang, Dian He, Yu Li, Chenyang Li, Xinyue Wang, Xingzheng Zhu, Haitao Sun, Yingying Xu

Biomed Opt Express. 2024 Apr 1; 15(4): 2498–2516. Published online 2024 Mar 19. doi: 10.1364/BOE.516541

PMCID:: PMC11019690

Article PDF–7.6M

Effects of intraocular scatter on near peripheral vision

Augusto Arias, Diego Montagud-Martinez, Pablo Artal

Biomed Opt Express. 2024 Apr 1; 15(4): 2517–2523. Published online 2024 Mar 19. doi: 10.1364/BOE.523715

PMCID:: PMC11019697

Article PDF–3.6M

Alternating projection combined with fast gradient projection (FGP-AP) method for intensity-only measurement optical diffraction tomography in LED array microscopy

Zewen Yang, Lu Zhang, Tong Liu, Huijun Wang, Zhiyuan Tang, Hong Zhao, Li Yuan, Zhenxi Zhang, Xiaolong Liu

Biomed Opt Express. 2024 Apr 1; 15(4): 2524–2542. Published online 2024 Mar 20. doi: 10.1364/BOE.518955

PMCID:: PMC11019679

Article PDF–34M

Automatic and real-time tissue sensing for autonomous intestinal anastomosis using hybrid MLP-DC-CNN classifier-based optical coherence tomography

Yaning Wang, Shuwen Wei, Ruizhi Zuo, Michael Kam, Justin D. Opfermann, Idris Sunmola, Michael H. Hsieh, Axel Krieger, Jin U. Kang

Biomed Opt Express. 2024 Apr 1; 15(4): 2543–2560. Published online 2024 Mar 25. doi: 10.1364/BOE.521652

PMCID:: PMC11019703

Article PDF–9.0M

Combined ion beam irradiation platform and 3D fluorescence microscope for cellular cancer research

Andrew D. Harken, Naresh T. Deoli, Citlali Perez Campos, Brian Ponnaiya, Guy Garty, Grace S. Lee, Malte J. Casper, Shikhar Dhingra, Wenze Li, Gary W. Johnson, Sally A. Amundson, Peter W. Grabham, Elizabeth M. C. Hillman, David J. Brenner

Biomed Opt Express. 2024 Apr 1; 15(4): 2561–2577. Published online 2024 Mar 25. doi: 10.1364/BOE.522969

PMCID:: PMC11019671

Article PDF–9.3M

Observation of blood motion in the internal jugular vein by contact and contactless photoplethysmography during physiological testing: case studies

Gennadi Saiko, Timothy Burton, Yasuyuki Kakihana, Kosaku Hatanaka, Ohtonari Takahito, Alexandre Douplik

Biomed Opt Express. 2024 Apr 1; 15(4): 2578–2589. Published online 2024 Mar 25. doi: 10.1364/BOE.516609

PMCID:: PMC11019709

Article PDF–4.5M

Improved dual-aggregation polyp segmentation network combining a pyramid vision transformer with a fully convolutional network

Feng Li, Zetao Huang, Lu Zhou, Yuyang Chen, Shiqing Tang, Pengchao Ding, Haixia Peng, Yimin Chu

Biomed Opt Express. 2024 Apr 1; 15(4): 2590–2621. Published online 2024 Mar 26. doi: 10.1364/BOE.510908

PMCID:: PMC11019695

Article PDF–4.6M

Full-field noise-correlation elastography for in-plane mechanical anisotropy imaging

Agathe Marmin, Nina Dufour, Sybille Facca, Stefan Catheline, Simon Chatelin, Amir Nahas

Biomed Opt Express. 2024 Apr 1; 15(4): 2622–2635. Published online 2024 Mar 26. doi: 10.1364/BOE.516166

PMCID:: PMC11019699

Article PDF–5.9M

Deep learning-assisted smartphone-based quantitative microscopy for label-free peripheral blood smear analysis

Bingxin Huang, Lei Kang, Victor T. C. Tsang, Claudia T. K. Lo, Terence T. W. Wong

Biomed Opt Express. 2024 Apr 1; 15(4): 2636–2651. Published online 2024 Mar 27. doi: 10.1364/BOE.511384

PMCID:: PMC11019683

Article PDF–4.1M

Mechanical stability of polarization signatures in biological tissue characterization

Yongtai Chen, Jinkui Chu, Benda Xin, Ji Qi

Biomed Opt Express. 2024 Apr 1; 15(4): 2652–2665. Published online 2024 Mar 29. doi: 10.1364/BOE.518756

PMCID:: PMC11019670

Article PDF–5.7M

On the quantitative analysis of lamellar collagen arrangement with second-harmonic generation imaging

Pedro Guimarães, Miguel Morgado, Ana Batista

Biomed Opt Express. 2024 Apr 1; 15(4): 2666–2680. Published online 2024 Mar 29. doi: 10.1364/BOE.516817

PMCID:: PMC11019681

Article PDF–6.5M

Handheld contact-type OCT and color fundus system for retinal imaging

Stefano Truzzi, Fabrice Manns, Jean-Marie Parel, Marco Ruggeri

Biomed Opt Express. 2024 Apr 1; 15(4): 2681–2696. Published online 2024 Mar 29. doi: 10.1364/BOE.520735

PMCID:: PMC11019701

Article PDF–7.7M

Robust autofocus method based on patterned active illumination and image cross-correlation analysis

Caiwei Li, Kehan Liu, Xiaoguang Guo, Yinghao Xiao, Yingjun Zhang, Zhen-Li Huang

Biomed Opt Express. 2024 Apr 1; 15(4): 2697–2707. Published online 2024 Mar 29. doi: 10.1364/BOE.520514

PMCID:: PMC11019692

Article PDF–5.6M

Removing crosstalk signals in neuron activity by time multiplexed excitations in a two-photon all-optical physiology system

Chi Liu, Yuejun Hao, Bo Lei, Yi Zhong, Lingjie Kong

Biomed Opt Express. 2024 Apr 1; 15(4): 2708–2718. Published online 2024 Mar 29. doi: 10.1364/BOE.521047

PMCID:: PMC11019693

Article PDF–25M

Articles from Biomedical Optics Express are provided here courtesy of Optica Publishing Group