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Items: 1 to 20 of 91

1.
Live Imaging of Heart Injury in Larval Zebrafish Reveals a Multi-Stage Model of Neutrophil and Macrophage Migration
Aryan Kaveh, Finnius A. Bruton, Charlotte Buckley, Magdalena E. M. Oremek, Carl S. Tucker, John J. Mullins, Jonathan M. Taylor, Adriano G. Rossi, Martin A. Denvir
Front Cell Dev Biol. 2020; 8: 579943. Published online 2020 Oct 19. doi: 10.3389/fcell.2020.579943
PMCID:
PMC7604347
AbstractArticlePDF–7.0M
2.
Adaptive prospective optical gating enables day-long 3D time-lapse imaging of the beating embryonic zebrafish heart
Jonathan M. Taylor, Carl J. Nelson, Finnius A. Bruton, Aryan Kaveh, Charlotte Buckley, Carl S. Tucker, Adriano G. Rossi, John J. Mullins, Martin A. Denvir
Nat Commun. 2019; 10: 5173. Published online 2019 Nov 15. doi: 10.1038/s41467-019-13112-6
Correction in:
Nat Commun. 2020; 11: 3648.
PMCID:
PMC6858381
AbstractArticlePDF–2.5M
3.
Time-lapse observation of stepwise regression of Erk activity in zebrafish presomitic mesoderm
Dini Wahyu Kartika Sari, Ryutaro Akiyama, Honda Naoki, Hannosuke Ishijima, Yasumasa Bessho, Takaaki Matsui
Sci Rep. 2018; 8: 4335. Published online 2018 Mar 12. doi: 10.1038/s41598-018-22619-9
PMCID:
PMC5847612
AbstractArticlePDF–9.1M
4.
Noise in the Vertebrate Segmentation Clock Is Boosted by Time Delays but Tamed by Notch Signaling
Sevdenur Keskin, Gnanapackiam S. Devakanmalai, Soo Bin Kwon, Ha T. Vu, Qiyuan Hong, Yin Yeng Lee, Mohammad Soltani, Abhyudai Singh, Ahmet Ay, Ertugrul M. Özbudak
Cell Rep. Author manuscript; available in PMC 2018 Jun 6.
Published in final edited form as: Cell Rep. 2018 May 15; 23(7): 2175–2185.e4. doi: 10.1016/j.celrep.2018.04.069
PMCID:
PMC5989725
AbstractArticlePDF–1.4M
5.
Stochastic Regulation of her1/7 Gene Expression Is the Source of Noise in the Zebrafish Somite Clock Counteracted by Notch Signalling
Robert P. Jenkins, Anja Hanisch, Cristian Soza-Ried, Erik Sahai, Julian Lewis
PLoS Comput Biol. 2015 Nov; 11(11): e1004459. Published online 2015 Nov 20. doi: 10.1371/journal.pcbi.1004459
PMCID:
PMC4654481
AbstractArticlePDF–7.5M
6.
Dynamics of the slowing segmentation clock reveal alternating two-segment periodicity
Nathan P. Shih, Paul François, Emilie A. Delaune, Sharon L. Amacher
Development. 2015 May 15; 142(10): 1785–1793. doi: 10.1242/dev.119057
PMCID:
PMC4440927
AbstractArticle
7.
Zebrafish Whole Mount High-Resolution Double Fluorescent In Situ Hybridization
Tim Brend, Scott A. Holley
J Vis Exp. 2009; (25): 1229. Published online 2009 Mar 25. doi: 10.3791/1229
PMCID:
PMC2789764
AbstractArticlePDF–794K
8.
Gene copy number and negative feedback differentially regulate transcriptional variability of segmentation clock genes
Oriana Q.H. Zinani, Kemal Keseroğlu, Supravat Dey, Ahmet Ay, Abhyudai Singh, Ertuğrul M. Özbudak
iScience. 2022 Jul 15; 25(7): 104579. Published online 2022 Jun 11. doi: 10.1016/j.isci.2022.104579
PMCID:
PMC9250017
AbstractArticlePDF–2.5M
9.
Segmentation clock gene pairing drives robust pattern formation
Oriana Q.H. Zinani, Kemal Keseroğlu, Ahmet Ay, Ertuğrul M. Özbudak
Nature. Author manuscript; available in PMC 2021 Jun 23.
Published in final edited form as: Nature. 2021 Jan; 589(7842): 431–436. Published online 2020 Dec 23. doi: 10.1038/s41586-020-03055-0
PMCID:
PMC7932681
AbstractArticlePDF–1.3M
10.
A Doppler Effect in Embryonic Pattern Formation
Daniele Soroldoni, David J. Jörg, Luis G. Morelli, David L. Richmond, Johannes Schindelin, Frank Jülicher, Andrew C. Oates
Science. Author manuscript; available in PMC 2021 Jun 21.
Published in final edited form as: Science. 2014 Jul 11; 345(6193): 222–5. doi: 10.1126/science.1253089
PMCID:
PMC7611034
AbstractArticlePDF–1.1M
11.
Muscle defects due to perturbed somite segmentation contribute to late adult scoliosis
Laura Lleras-Forero, Elis Newham, Stefan Teufel, Koichi Kawakami, Christine Hartmann, Chrissy L. Hammond, Robert D. Knight, Stefan Schulte-Merker
Aging (Albany NY) 2020 Sep 30; 12(18): 18603–18621. Published online 2020 Sep 25. doi: 10.18632/aging.103856
PMCID:
PMC7585121
AbstractArticlePDF–1.9M
12.
Repressor Dimerization in the Zebrafish Somitogenesis Clock
Olivier Cinquin
PLoS Comput Biol. 2007 Feb; 3(2): e32. Published online 2007 Feb 16. doi: 10.1371/journal.pcbi.0030032
PMCID:
PMC1797823
AbstractArticlePDF–720K
13.
Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation
Ece Özelçi, Erik Mailand, Matthias Rüegg, Andrew C. Oates, Mahmut Selman Sakar
Nat Commun. 2022; 13: 7934. Published online 2022 Dec 24. doi: 10.1038/s41467-022-35632-4
PMCID:
PMC9789989
AbstractArticlePDF–7.5M
14.
Macrophages trigger cardiomyocyte proliferation by increasing epicardial vegfaa expression during larval zebrafish heart regeneration
Finnius A. Bruton, Aryan Kaveh, Katherine M. Ross-Stewart, Gianfranco Matrone, Magdalena E.M. Oremek, Emmanouil G. Solomonidis, Carl S. Tucker, John J. Mullins, Christopher D. Lucas, Mairi Brittan, Jonathan M. Taylor, Adriano G. Rossi, Martin A. Denvir
Dev Cell. 2022 Jun 20; 57(12): 1512–1528.e5. doi: 10.1016/j.devcel.2022.05.014
PMCID:
PMC9616726
AbstractArticle
15.
Selective Cdk9 inhibition resolves neutrophilic inflammation and enhances cardiac regeneration in larval zebrafish
Aryan Kaveh, Finnius A. Bruton, Magdalena E. M. Oremek, Carl S. Tucker, Jonathan M. Taylor, John J. Mullins, Adriano G. Rossi, Martin A. Denvir
Development. 2022 Apr 15; 149(8): dev199636. Published online 2021 Oct 26. doi: 10.1242/dev.199636
PMCID:
PMC8601713
AbstractArticle
16.
Size-reduced embryos reveal a gradient scaling-based mechanism for zebrafish somite formation
Kana Ishimatsu, Tom W. Hiscock, Zach M. Collins, Dini Wahyu Kartika Sari, Kenny Lischer, David L. Richmond, Yasumasa Bessho, Takaaki Matsui, Sean G. Megason
Development. 2018 Jun 1; 145(11): dev161257. Published online 2018 Jun 11. doi: 10.1242/dev.161257
PMCID:
PMC6031319
AbstractArticle
17.
Transcript processing and export kinetics are rate-limiting steps in expressing vertebrate segmentation clock genes
Nathaniel P. Hoyle, David Ish-Horowicz
Proc Natl Acad Sci U S A. 2013 Nov 12; 110(46): E4316–E4324. Published online 2013 Oct 22. doi: 10.1073/pnas.1308811110
PMCID:
PMC3831944
AbstractArticlePDF–2.1M
18.
Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts
Kiel T. Tietz, Thomas L. Gallagher, Monica C. Mannings, Zachary T. Morrow, Nicolas L. Derr, Sharon L. Amacher
Dev Biol. Author manuscript; available in PMC 2021 Jun 15.
Published in final edited form as: Dev Biol. 2020 Jun 15; 462(2): 129–140. Published online 2020 Apr 1. doi: 10.1016/j.ydbio.2020.03.017
PMCID:
PMC7255434
AbstractArticlePDF–2.0M
19.
TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data
Shaokun An, Liang Ma, Lin Wan
BMC Genomics. 2019; 20(Suppl 2): 224. Published online 2019 Apr 4. doi: 10.1186/s12864-019-5477-8
PMCID:
PMC6456934
AbstractArticlePDF–6.6M
20.
Transient cardiomyocyte fusion regulates cardiac development in zebrafish
Suphansa Sawamiphak, Zacharias Kontarakis, Alessandro Filosa, Sven Reischauer, Didier Y. R. Stainier
Nat Commun. 2017; 8: 1525. Published online 2017 Nov 15. doi: 10.1038/s41467-017-01555-8
PMCID:
PMC5688123
AbstractArticlePDF–11M

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