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Select item 34124101.

Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls

Chaolin Zhang, Maria A. Frias, Aldo Mele, Matteo Ruggiu, Taesun Eom, Christina B. Marney, Huidong Wang, Donny D. Licatalosi, John J. Fak, Robert B. Darnell

Science. Author manuscript; available in PMC 2012 Aug 6.

Published in final edited form as: Science. 2010 Jul 23; 329(5990): 439–443. Published online 2010 Jun 17. doi: 10.1126/science.1191150

PMCID:: PMC3412410

Abstract Article PDF–2.3M

Select item 25972942.

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Donny D. Licatalosi, Aldo Mele, John J. Fak, Jernej Ule, Melis Kayikci, Sung Wook Chi, Tyson A. Clark, Anthony C. Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell

Nature. Author manuscript; available in PMC 2009 May 27.

Published in final edited form as: Nature. 2008 Nov 27; 456(7221): 464–469. Published online 2008 Nov 2. doi: 10.1038/nature07488

PMCID:: PMC2597294

Abstract Article PDF–812K

Select item 237733.

The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia

Yolanda Y. L. Yang, Guang Lin Yin, Robert B. Darnell

Proc Natl Acad Sci U S A. 1998 Oct 27; 95(22): 13254–13259. doi: 10.1073/pnas.95.22.13254

PMCID:: PMC23773

Abstract Article PDF–509K

Select item 66496874.

Differential NOVA2-mediated splicing in excitatory and inhibitory neurons regulates cortical development and cerebellar function

Yuhki Saito, Yuan Yuan, Ilana Zucker-Scharff, John J. Fak, Saša Jereb, Yoko Tajima, Donny D. Licatalosi, Robert B. Darnell

Neuron. Author manuscript; available in PMC 2020 Feb 20.

Published in final edited form as: Neuron. 2019 Feb 20; 101(4): 707–720.e5. Published online 2019 Jan 9. doi: 10.1016/j.neuron.2018.12.019

PMCID:: PMC6649687

Abstract Article PDF–2.2M

Select item 26424755.

Rescuing Z⁺ agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing

Matteo Ruggiu, Ruth Herbst, Natalie Kim, Marko Jevsek, John J. Fak, Mary Anne Mann, Gerald Fischbach, Steven J. Burden, Robert B. Darnell

Proc Natl Acad Sci U S A. 2009 Mar 3; 106(9): 3513–3518. Published online 2009 Feb 12. doi: 10.1073/pnas.0813112106

PMCID:: PMC2642475

Abstract Article PDF–1.7M

Select item 186066.

A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing

Alexandros D. Polydorides, Hirotaka J. Okano, Yolanda Y. L. Yang, Giovanni Stefani, Robert B. Darnell

Proc Natl Acad Sci U S A. 2000 Jun 6; 97(12): 6350–6355. Published online 2000 May 30. doi: 10.1073/pnas.110128397

PMCID:: PMC18606

Abstract Article PDF–407K

Select item 66873907.

Temporal regulation of axonal repulsion by alternative splicing of a conserved microexon in mammalian Robo1 and Robo2

Verity Johnson, Harald J Junge, Zhe Chen

eLife. 2019; 8: e46042. Published online 2019 Aug 8. doi: 10.7554/eLife.46042

PMCID:: PMC6687390

Abstract Article PDF–3.7M

Select item 46337198.

The alternative splicing factor Nova2 regulates vascular development and lumen formation

Costanza Giampietro, Gianluca Deflorian, Stefania Gallo, Anna Di Matteo, Davide Pradella, Serena Bonomi, Elisa Belloni, Daniel Nyqvist, Valeria Quaranta, Stefano Confalonieri, Giovanni Bertalot, Fabrizio Orsenigo, Federica Pisati, Elisabetta Ferrero, Giuseppe Biamonti, Evelien Fredrickx, Carla Taveggia, Chris D. R. Wyatt, Manuel Irimia, Pier Paolo Di Fiore, Benjamin J. Blencowe, Elisabetta Dejana, Claudia Ghigna

Nat Commun. 2015; 6: 8479. Published online 2015 Oct 8. doi: 10.1038/ncomms9479

PMCID:: PMC4633719

Abstract Article PDF–3.4M

Select item 82666539.

NOVA2 regulates neural circRNA biogenesis

David Knupp, Daphne A Cooper, Yuhki Saito, Robert B Darnell, Pedro Miura

Nucleic Acids Res. 2021 Jul 9; 49(12): 6849–6862. Published online 2021 Jun 22. doi: 10.1093/nar/gkab523

PMCID:: PMC8266653

Abstract Article PDF–12M

Select item 502647210.

An alternative splicing program promotes adipose tissue thermogenesis

Santiago Vernia, Yvonne JK Edwards, Myoung Sook Han, Julie Cavanagh-Kyros, Tamera Barrett, Jason K Kim, Roger J Davis

eLife. 2016; 5: e17672. Published online 2016 Sep 16. doi: 10.7554/eLife.17672

PMCID:: PMC5026472

Abstract Article PDF–3.1M

Select item 493032811.

NOVA2-mediated RNA regulation is required for axonal pathfinding during development

Yuhki Saito, Soledad Miranda-Rottmann, Matteo Ruggiu, Christopher Y Park, John J Fak, Ru Zhong, Jeremy S Duncan, Brian A Fabella, Harald J Junge, Zhe Chen, Roberto Araya, Bernd Fritzsch, A J Hudspeth, Robert B Darnell

eLife. 2016; 5: e14371. Published online 2016 May 25. doi: 10.7554/eLife.14371

PMCID:: PMC4930328

Abstract Article PDF–6.2M

Select item 493032912.

NOVA regulates Dcc alternative splicing during neuronal migration and axon guidance in the spinal cord

Janelle C Leggere, Yuhki Saito, Robert B Darnell, Marc Tessier-Lavigne, Harald J Junge, Zhe Chen

eLife. 2016; 5: e14264. Published online 2016 May 25. doi: 10.7554/eLife.14264

PMCID:: PMC4930329

Abstract Article PDF–8.3M

Select item 296585013.

Nova2 regulates neuronal migration through an RNA switch in disabled-1 signaling

Masato Yano, Yoshika Hayakawa-Yano, Aldo Mele, Robert B. Darnell

Neuron. Author manuscript; available in PMC 2011 Jun 24.

Published in final edited form as: Neuron. 2010 Jun 24; 66(6): 848–858. doi: 10.1016/j.neuron.2010.05.007

PMCID:: PMC2965850

Abstract Article PDF–2.1M

Select item 355242414.

NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure

Taesun Eom, Chaolin Zhang, Huidong Wang, Kenneth Lay, John Fak, Jeffrey L Noebels, Robert B Darnell

eLife. 2013; 2: e00178. Published online 2013 Jan 22. doi: 10.7554/eLife.00178

PMCID:: PMC3552424

Abstract Article PDF–5.5M

Select item 340438915.

Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain

Donny D. Licatalosi, Masato Yano, John J. Fak, Aldo Mele, Sarah E. Grabinski, Chaolin Zhang, Robert B. Darnell

Genes Dev. 2012 Jul 15; 26(14): 1626–1642. doi: 10.1101/gad.191338.112

PMCID:: PMC3404389

Abstract Article PDF–3.4M

Select item 586818116.

CITGeneDB: a comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice

Jin Li, Su-Ping Deng, Gang Wei, Peng Yu

Database (Oxford) 2018; 2018: bay012. Published online 2018 Mar 23. doi: 10.1093/database/bay012

PMCID:: PMC5868181

Abstract Article PDF–653K

Select item 119959117.

A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain

Adrienne E McKee, Emmanuel Minet, Charlene Stern, Shervin Riahi, Charles D Stiles, Pamela A Silver

BMC Dev Biol. 2005; 5: 14. Published online 2005 Jul 20. doi: 10.1186/1471-213X-5-14

PMCID:: PMC1199591

Abstract Article PDF–2.0M

Select item 831323918.

Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development

Francesco Bedogni, Robert F. Hevner

Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034

PMCID:: PMC8313239

Abstract Article PDF–1.6M

Select item 141356819.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 357241020.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

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